Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0049 ATGGCATCTAGAGCTTCTAATGTCGATCTCTTTGATGCTTATTTTCGGCATGCTGATTTGGACCACGACGGCCGCATCAGTGGCACCGAAGCTGTCTCCTTCTTCCAAGGCTCTGGTTTGCCCAAGCAGGTCCTCGCTCAGATTTGGGCTTTTGCAAACCAAAGCCAGAGTGGATTCCTTGGTCGGGCAGAGTTTTACAATGCCCTTAAGCTTGTCACTGTAGCGCAAAGTAAACGGGAGCTTACTCCTGAAATAGTAAAAGCAGCATTATATGGTCCAGCTACATCTAAAATACCTGCACCTCAAATCAATTTTAGTGCCACAGTTGCACCCCAACTGAATTCTTCTGCACCTACGCCTTCACCTATGCCCACCACCACAGCTACACCTGCATCTGCACCTGCATCTACATCTGCATCTGCATCTGCATCACAGAGTAATATTAATTCTATGCCCCATCAAAATGTTGGACTAAGAGGGCCACTCCCAAGTTTAAGTGGAAACCAGCAAAATCTTCCTTACCCGGGAAGCCCATTAGTGAAGCCAACACAAAATATCCCTGATAGTGCTTCTAATCTAGCACCTGGTATTGCCAATCAGGGAATCCGTGGAGTGATGGCTGGTGGAGGACCTCATGCTGAAACTCATGGCATACAAAGTGATGGGTCCACTCCCCAGATGGTTGGTGTTCCAGCGGTAACATCCTCTCTAATAGCACCTAGAGGAAGTAGTCCCACATCTACTCAGGAGGTGTCTGGGCTTGCAACATCTGGATCAAATGTTAGACTGGCAGTGGGACAATATCCTGCCTCTGGCACTAAGTCATCTGATCAAGCGGCTAAGGATTCTAAGTCAGCGGATACTTCTGGGAATGGTGTTGCTTCTGATATAGCCTTTGGAGGGGATATGTTCTCTGCAAGCTCGTTTCAGCCCAAGAAAGATTCTTCTACACTAGGATTTTCTTCTGGAAGTTCACCACTTTCATCAGCTACTGTTCCTGTATCTGGAGGGAACCAGCAGTCTATTAGGACTAGCTTGACTGAATCTTTGCAGAGCCCAATTGCATCCCAGCCTGTTGGTGCACAGCTTCCACAGGTCCAACCAGTGGGGAAACAGAATCAGCATGCCTTGGTCCAAACACATAATATGCCAAATCCACCTGGACATCCAGTGAGGTTGCAGGATTCTGCTTCTAGTCAGCCTCAATCTCCATGGCCAAGGATGACTTCAACTGATATTCAGAAGTATACAAAAGTATTTGTTGCAGTAGATACAGATAGGGATGGGAAAATCACTGGGGAACAAGCCCGGAACTTGTTCCTTAGCTGGAGATTACCACGGGAGGTTTTAAAGCAGGTTTGGGACTTATCTGATCAAGATAATGATAGCATGCTTTCTCTCAGGGAGTTTTGTATTGCACTGTACCTAATGGAACRACACAGGGAAGGACGTGCTCTTCCAGGAGTACTTCCAAGTAACATTCTCCTTGCTTTACCACCTTCTGGCCTACCTGCYACTCAGTACAGTTCTGTAACTTGGGGAAATCCATCAGGTTTTCAACAAGAGGAAGGGATGAGTGACCCTGGTGCTCAACGAGTGAACCCAACTACAGGCCGGCCACCAAGGCCAGCTTCTGTTTTTCTGTCTGATGAAGGACTTCAAAAACAGCAAAAGTCCCAAGTTCCAGTGTTGGAGAAGCACGTCATYAATCAGTTGAGTTCAGATGAGCAAAATTCAATTAATTCAAAGTTTCAAGAAGCATCAGAAGCTGATAAGAAGGTGGAAGCACTTGAGAAAGAAATTGTGGAGTCCAGAGAGAAAATAGAATTCTGCCATGCAAAAATGCAGGAACTTGTTCTGTACAAGAGCAGATGTGACAATCGTCTTAATGAGATCATAGAAAGGACATCAGCTGACAAGCGTGAGGTTGAGATCCTCACAAAAAAGTACGATGATAAATATAAACAAGTTGGAGATGTATCATCCAAGTTAACTACTGAGGAAGCCACATTTCGTGACATACAGGAGAAAAAAATTGAAGTGTATCAAGCAATTGCCAAGATGGAACAAGATGGAAATGTAGATGATTCTTTACTGGCTCATGCTGATTGTATCCAATCAGACCTTGATGAACTGGTAAAATCTCTAAACAACCGGTGTAAGAAGTATGGATTACGTGCAAAGCCAACAACACTTGTGGAACTACCCTTTGGCTGGCAGCCTGGTATCCAAGAAGGAGCTGCTGACTGGGATGAAGATTGGGATAAGCTTGAAGATAAAGAATTCGCCTTTGTCAAAGAACTCACACTTGATGTGCAAAACATCATCGCACCTCTGAAACAAAAATTGCCATTGGCTTYGAAACAGAAAGATTCAGAAATTGATAGTTCCAGAATTGCAGCTTCACCTAAGAGTGATAAAAAGTCTGAAAATCCCCAGAACACAGATGAGCAAGAAGTTGGCAATATTCATAATAAAAGTGAAGATGGGTCTGCAAAAAGTGTTCCTAACAGTCCATTTTCTAGGAGTTCTATTGGAAGTCCCCAGAGAGACTTTGCTGACTCTGGCATGGGGATGATTGCTGCTGGCGAAGATCGYTCACCCYGTGATCAAGATATCATACAAGGAACCCAAAGTGATCATAGTGGAGTCAAGTCTGTCTTTTCTGGTGAGAAAATTTTTGACGAACCAAATTGGGGAACCTTTGACGCTAATGATGATATTGACTCAGTTTGGGGATTCAATGCCAGTAGCACCACAAACGAGGAGAGAGATCTTAAGGGAGCTGGAGATGACTATTTCTTTGGTTCTGGGGATCTGGGCCTTGGCTCGATTAAAACAGGTTCACCACAGGGTGGTGATCCCTTCCTGAAGAGTGGCGGATTCAGTTTTGATGATTCTGTTCCAAACACACCACTTTTCAGCTCCAGCAGCTCTCCACAAAGGCCCAAAGAGTGGTTGGACAGTTCTTTTGACAACTTCTCTAGATTTGATTCTTTCCGTTCAGAGGATAGTGGCACTTTATCTACTCGGGAGACACCARCGCGGTTTGATTCAGTCCGCAGAGATATGGACTTTGATCATCTTCAAGGCTTTCCGGCATTTGATGACTCAGATCCCTTTGGCTCTGGGCCATTTAGGACTTCATCAGAAAACGAAGCTCACAGAAGAGGGTACCTTTGTCCACTTGAAGAGGATTGTGGTCCCGATGACTATCGGATTGTTGTCTGCATTGTGGATGAAAAGCATAGAATCCGACGTCCAATCGTCCATGGCAGTCACATAGACGGAGCATCCAGCAGTGAGAGTGAAGTCGTCAAAATCGGTGCCATCTTCACATTRAAAACYATAAACGGGAGAGTTTCCAAAATTGCGATCCAAGCTGCTGAGAGGGACGTCAATGCAGATCCTCGCATCCTGGGTGGACGTAAATTGTCTATCACCGTCCATGACTCCAACTTCAGTGGCTTTCTTAGCTTCATTGGGGCCCTCAAGTTGTTGGTGACGGACACTGTAGCAATAATTGGTCCGCAAAATTCGGGGATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCACGTCCCTCTACTCTCCTTTACGGCTCTTGATCCCACTCTGTCGCCTCTTCAGTACCCTTATTTCGTTCAAACTGCACCCAGCGATCAGTTCCAGATGACTGCGGTGGCAGACATGATTAGCTATTATGGTTGGAGAGAGGTCATTGCGGTGTTCAGCGACGATGATCAGAGCCGAAATGGCATAACTGTGTTGGGGGATAAGCTTGCAGAGAAACGCTGTAAGTTGTCTTATAAAGCAGCACTGCCCCCTGATCCAACAGCCAGCGCAAGCGATGTATCCTCTGAGCTGGCCAAGATTCAAAGCATGGAAGCTCGAGTGGTTGTAGTGCACACCTTTGCCCAAACAGGTCTCTTGGTTTTTGATGTGGCTCAAAGACTAGGGATGATGAGGCAAGGCTATGTTTGGATAGCTACTACTTGGCTTTCAACTGTCTTAGATTCAACTTCAAACACCTCCAACTCTCTGGATATCCGGGGAGTTCTCACGCTTCGCCCTCACACCCCTTTGTCAAGACCAAAACAGGCATTCATCTCAAGGTGGAAGCACATTAGTAATGGCTCTGTTGGGTTAAACCCATACGGACTCTACGCTTATGATGCTGTTTGGACCATTGCCCACGCATTGAAGCTATTCTTTGCTGATAATGGGACCATCTCTTTCTCCAATAATACAAATTTTGGTGGTATGGCTGGTCTTGCTTCCTTGAGCATCTTTGATGGTGGGAACCAGTTACTGGATAACATACTTCGCATAAACACGACTGGATTGACAGGGCCGATTCAATTTGTTGGCTCAAACAGATCCCCCCTGCATCCATCCTATGACATCCTTAATGTACATGCCACTGGCTACAGGACTATTGGATACTGGTCCAATTACTCTGGCCTCTCTGTCACMACTCCCGAGAAACTTCACAGAAAGACATCCATCCGCTCTGTTTCAAACCAGCATCTATACAATGTGACGTGGCCTGGAAATACAAGGGAAAGGCCTCGTGGATGGGTTTTCCCCCATAGTGGGAGGCAACTCAGAATCGGGGTCCCCAACAGAGCCAGTTATCAAGGCATCGTCTCACAAATAAATGGCACCCATGTAGTTCAAGGATACTGCATMGACATATTCCTCGCTGCCATCAAATTGCTTCCATATCCAATTCAATATAGGTTCATTCTGTTTGGAGAAGGACATAAGAATCCAAGCTACTATGATCTTGTCAACATGATTGCTTCGGATGTGTTTGATGCTGCTATAGGTGACATTGCAATTGTCACTGACCGAACAAAGATCGTGGATTTTACTCAACCATATATAGAGTCAGGTCTAGTTGTGGTTGCTCCGGTTCAAAGATTGAAGTCAAGTTCTTGGGCTTTCTTGAGACCATTTACTGCACCCATGTTTAGTTTCTCAACTATGTTCTTTGCGCACAGAGAGAACACAGTTAGCCCACTTGGTCGTGTTGTGCTGATAATATGGCTTTTTGTGGTTCTAATAATCAATTCAAGTTACACGGCAAGCTTGACGTCAATTCTAACTGTGCAGCAGCTGTCCTCACCCATAACGGGCATTGACACCTTGATAACAAGCAACAAGCCCATAGGATTCCAGGTAGGGTCATTTGCTGAGAATTATCTCACTCAGGAACTCAACATCCCAAAACATAGGCTTGTTCCCCTTGGCTCGCCAGAAGAATATGCTTCTGCCCTTGAGAAGGGAACTGTTGCCGCTGTGGTAGATGAACGCCCATATGTTGAACTCTTCCTGTCAGAACACTGCCAATTCTCAATTAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCGGAGGGACTCTCCTTTAGCCATTGACATGTCAACTGCCATTCTGAGTCTATCCGAGAACGGTGAACTTAGYAAGATCCATGATAAGTGGCTTTCAAAGAAGGCCTGTGGTTTTCGCGGTGCACAGGATGAGCAGCTTCAATTYAACAGTTTCCGGGGCCTATTCCTGATCTGCGGGATAGCGTGTTTGGCGGCGCTCCTTATCTACTTGCCCTCGGTGGCATACCAATTCAGTCAGAACTCCCCGGAAAGAGAGAGASGCAATCATCCTTTTGGTCATTCCAGCACCTCACGTTCTGCACGCATACAGACATTTCTAAGCTTCGTTGATGAAAAGGAAGACACATCACGCAACAGCAGCAGCAGCGGCAAGTTAAAAAGGAAACTTGAGGATATCTCATCTTCCAGATCCAGAACCAGAATCAGCCGTTTAAGGACCATGGCCATGCCCAAGAAATTACACATACACATAGGCACTTCTCAACAGTCAGGACCAAATGCCGGMTACTCAGGTTCCACCGATCAAGCAATCAAKTAG 5946 0.4569 MASRASNVDLFDAYFRHADLDHDGRISGTEAVSFFQGSGLPKQVLAQIWAFANQSQSGFLGRAEFYNALKLVTVAQSKRELTPEIVKAALYGPATSKIPAPQINFSATVAPQLNSSAPTPSPMPTTTATPASAPASTSASASASQSNINSMPHQNVGLRGPLPSLSGNQQNLPYPGSPLVKPTQNIPDSASNLAPGIANQGIRGVMAGGGPHAETHGIQSDGSTPQMVGVPAVTSSLIAPRGSSPTSTQEVSGLATSGSNVRLAVGQYPASGTKSSDQAAKDSKSADTSGNGVASDIAFGGDMFSASSFQPKKDSSTLGFSSGSSPLSSATVPVSGGNQQSIRTSLTESLQSPIASQPVGAQLPQVQPVGKQNQHALVQTHNMPNPPGHPVRLQDSASSQPQSPWPRMTSTDIQKYTKVFVAVDTDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCIALYLMEXHREGRALPGVLPSNILLALPPSGLPATQYSSVTWGNPSGFQQEEGMSDPGAQRVNPTTGRPPRPASVFLSDEGLQKQQKSQVPVLEKHVINQLSSDEQNSINSKFQEASEADKKVEALEKEIVESREKIEFCHAKMQELVLYKSRCDNRLNEIIERTSADKREVEILTKKYDDKYKQVGDVSSKLTTEEATFRDIQEKKIEVYQAIAKMEQDGNVDDSLLAHADCIQSDLDELVKSLNNRCKKYGLRAKPTTLVELPFGWQPGIQEGAADWDEDWDKLEDKEFAFVKELTLDVQNIIAPLKQKLPLAXKQKDSEIDSSRIAASPKSDKKSENPQNTDEQEVGNIHNKSEDGSAKSVPNSPFSRSSIGSPQRDFADSGMGMIAAGEDRSPXDQDIIQGTQSDHSGVKSVFSGEKIFDEPNWGTFDANDDIDSVWGFNASSTTNEERDLKGAGDDYFFGSGDLGLGSIKTGSPQGGDPFLKSGGFSFDDSVPNTPLFSSSSSPQRPKEWLDSSFDNFSRFDSFRSEDSGTLSTRETPXRFDSVRRDMDFDHLQGFPAFDDSDPFGSGPFRTSSENEAHRRGYLCPLEEDCGPDDYRIVVCIVDEKHRIRRPIVHGSHIDGASSSESEVVKIGAIFTLKTINGRVSKIAIQAAERDVNADPRILGGRKLSITVHDSNFSGFLSFIGALKLLVTDTVAIIGPQNSGMAHVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDQFQMTAVADMISYYGWREVIAVFSDDDQSRNGITVLGDKLAEKRCKLSYKAALPPDPTASASDVSSELAKIQSMEARVVVVHTFAQTGLLVFDVAQRLGMMRQGYVWIATTWLSTVLDSTSNTSNSLDIRGVLTLRPHTPLSRPKQAFISRWKHISNGSVGLNPYGLYAYDAVWTIAHALKLFFADNGTISFSNNTNFGGMAGLASLSIFDGGNQLLDNILRINTTGLTGPIQFVGSNRSPLHPSYDILNVHATGYRTIGYWSNYSGLSVTTPEKLHRKTSIRSVSNQHLYNVTWPGNTRERPRGWVFPHSGRQLRIGVPNRASYQGIVSQINGTHVVQGYCIDIFLAAIKLLPYPIQYRFILFGEGHKNPSYYDLVNMIASDVFDAAIGDIAIVTDRTKIVDFTQPYIESGLVVVAPVQRLKSSSWAFLRPFTAPMFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLITSNKPIGFQVGSFAENYLTQELNIPKHRLVPLGSPEEYASALEKGTVAAVVDERPYVELFLSEHCQFSIRGQEFTKSGWGFAFRRDSPLAIDMSTAILSLSENGELSKIHDKWLSKKACGFRGAQDEQLQFNSFRGLFLICGIACLAALLIYLPSVAYQFSQNSPERERXNHPFGHSSTSRSARIQTFLSFVDEKEDTSRNSSSSGKLKRKLEDISSSRSRTRISRLRTMAMPKKLHIHIGTSQQSGPNAGYSGSTDQAIX* 1982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0049 1981 MobiDBLite consensus disorder prediction 217 292 - -
Amo07g0049 1981 Pfam EF hand 12 30 IPR002048 GO:0005509
Amo07g0049 1981 SUPERFAMILY Periplasmic binding protein-like II 1534 1838 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 109 409 - -
Amo07g0049 1981 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1660 1950 - -
Amo07g0049 1981 SUPERFAMILY EF-hand 401 494 IPR011992 -
Amo07g0049 1981 CDD EH 416 482 IPR000261 GO:0005515
Amo07g0049 1981 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Amo07g0049 1981 MobiDBLite consensus disorder prediction 788 814 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 827 850 - -
Amo07g0049 1981 Pfam Receptor family ligand binding region 1124 1474 IPR001828 -
Amo07g0049 1981 Gene3D - 3 97 - -
Amo07g0049 1981 Gene3D - 1800 1833 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 871 885 - -
Amo07g0049 1981 Gene3D - 1124 1465 - -
Amo07g0049 1981 Coils Coil 580 614 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 944 963 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 109 154 - -
Amo07g0049 1981 Pfam Ligand-gated ion channel 1836 1865 IPR001320 GO:0015276|GO:0016020
Amo07g0049 1981 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1098 1659 - -
Amo07g0049 1981 Gene3D - 1532 1647 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 1955 1981 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 509 546 - -
Amo07g0049 1981 Gene3D - 1221 1490 - -
Amo07g0049 1981 Gene3D - 393 497 - -
Amo07g0049 1981 ProSiteProfiles EH domain profile. 7 97 IPR000261 GO:0005515
Amo07g0049 1981 Gene3D - 1759 1799 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 392 409 - -
Amo07g0049 1981 Gene3D - 1648 1738 - -
Amo07g0049 1981 ProSiteProfiles EH domain profile. 412 495 IPR000261 GO:0005515
Amo07g0049 1981 PANTHER GLUTAMATE RECEPTOR 3.6 1660 1950 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 788 889 - -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 161 196 - -
Amo07g0049 1981 CDD EH 11 77 IPR000261 GO:0005515
Amo07g0049 1981 Pfam Cytoskeletal-regulatory complex EF hand 406 477 IPR000261 GO:0005515
Amo07g0049 1981 MobiDBLite consensus disorder prediction 509 524 - -
Amo07g0049 1981 SMART AABind_6 1536 1837 IPR001638 -
Amo07g0049 1981 SUPERFAMILY Periplasmic binding protein-like I 1101 1529 IPR028082 -
Amo07g0049 1981 MobiDBLite consensus disorder prediction 1959 1981 - -
Amo07g0049 1981 CDD GluR_Plant 1535 1834 - -
Amo07g0049 1981 PANTHER GLUTAMATE RECEPTOR 3.6 1098 1659 - -
Amo07g0049 1981 SMART efh_1 44 72 IPR002048 GO:0005509
Amo07g0049 1981 SMART efh_1 10 38 IPR002048 GO:0005509
Amo07g0049 1981 SMART efh_1 449 477 IPR002048 GO:0005509
Amo07g0049 1981 SMART efh_1 415 443 IPR002048 GO:0005509
Amo07g0049 1981 SMART eh_3 2 95 IPR000261 GO:0005515
Amo07g0049 1981 SMART eh_3 404 503 IPR000261 GO:0005515
Amo07g0049 1981 MobiDBLite consensus disorder prediction 308 381 - -
Amo07g0049 1981 Pfam Bacterial extracellular solute-binding proteins, family 3 1558 1835 IPR001638 -
Amo07g0049 1981 SUPERFAMILY EF-hand 7 86 IPR011992 -
Amo07g0049 1981 SMART GluR_14 1538 1836 IPR001320 GO:0015276|GO:0016020
Amo07g0049 1981 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Amo07g0049 1981 CDD PBP1_GABAb_receptor_plant 1107 1492 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0049 Amo-Chr7 570875 583773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0049 1096 1946 Ion Channels AT2G17260 57.947 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0049 K05387 K12472 gsj:114385464 1365.9