Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0032 ATGCATCATTCACAGTTGCGTAATTGTGTAAAATATATGACAGCCCTCAAGTTGTTGGTGACGGACACTGTAGCAATAATTGGTCCGCAAAGTTCGGTGATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCACGTCCCTCTACTCTCCTTCACGGCTCTTGATCCCACCCTGTCGCCTCTTCAGTACCCTTATTTCGTTCAAACTGCACCCAGCGATCAGTTCCAGATGACTGCGGTGGCAGACATGATTAGCTATTATGGTTGGAGAGAGGTCATTGCGGTGTTCAGCGACGATGATCAGAGTCGAAATGGCATAACTGTGTTGGGGGATAAGCTTGCAGAGAAACGCTGTAAGTTGTCTTATAAAGCAGCACTGCCCCCTGATCCAACGGCCAGCGCAAGCGATGTATCCTCTGAGCTGGCCAAGATTCAAAGTATGGAAGCTCGGGTGGTTGTAGTGCACACCTTTGCCCAAACAGGTCTCTTGGTTTTTGATGTGGCTCACAGACTAGGGATGATGAGGCAAGGCTATGTGTGGATAGCTACTACTTGGCTTTCAACTGTCTTAGATTCAACTTCAAACACCTCCAACTCTCTGGATATCCGGGGAGTTCTCACGCTTCGCCCTCACACCCCTCTGTCAAGACCAAAACAGGCATTCATCTCAAGGTGGAAGCACATTAGTAATGGCTCTGTTGGATTAAACCCATACGGACTCTACGCTTATGATGCTGTTTGGACCATTGCCCACGCATTGAAACTATTCTTTGCTGAGAATGGGACCATCTCTTTCTCCAATAATACAAATTTTGGTGGTATGGCTGGTCTTGCTTCCTTGAGCATCTTTGATGGTGGGAACCAGTTACTCGATAACATACTTCGCATAAACACCACTGGATTGACAGGGCCGATTCAATTTGTTAGCTCAAACAGATCCCCCCTGCATCCATCCTATGACATCCTTAATGTACATGCCACTGGCTACAGGACTATTGGATACTGGTCCAATTACTCTGGCCTCTCTGTCACMACTCCCGAGAAACTTCACAGAAAGACATCCATCCGCTCTGTTTCAAACCAGCATCTATACAATGTGACGTGGCCTGGAAATACAAGGGAAAGGCCTCGTGGATGGGTTTTCCCCCATAGTGGGAGGCAACTCAGAATCGGGGTCCCCAACAGAGCCAGTTATCAAGGCATCGTCTCACAAATAAATGGCACCCATGTAGTTCAAGGATACTGCATMGACATATTCCTCGCTGCCATCAAATTGCTTCCATATCCAATTCAATATAGGTTCATTCTGTTTGGAGAAGGACATAAGAATCCAAGCTACTATGATCTTGTCAACATGATTGCTTCGGATGTGTTTGATGCTGCTATAGGTGACATTGCAATTGTCACTGACCGAACAAAGATCGTGGATTTTACTCAACCATATATAGAGTCAGGTCTAGTTGTGGTTGCTCCGGTTCAAAGATTGAAGTCAAGTTCTTGGGCTTTCTTGAGACCATTTACTGCACCCATGTGGGGTGTCACTGCACTTTTTTTCCTTCTTATTGGAGCAGTGATCTGGATTCTTGAACACCGAACCAACGATGAGTTCCGAGGGCCTCCAAAGACGCAAATAGTGACTGTTCTTTGGCAAGCACGCTTGGCTTTTAAATTATTAGTCATACATTCCTTCCTCGCTTGTACTAGTCGGTTCAGTTTGTCAACATAA 1728 0.4606 MHHSQLRNCVKYMTALKLLVTDTVAIIGPQSSVMAHVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDQFQMTAVADMISYYGWREVIAVFSDDDQSRNGITVLGDKLAEKRCKLSYKAALPPDPTASASDVSSELAKIQSMEARVVVVHTFAQTGLLVFDVAHRLGMMRQGYVWIATTWLSTVLDSTSNTSNSLDIRGVLTLRPHTPLSRPKQAFISRWKHISNGSVGLNPYGLYAYDAVWTIAHALKLFFAENGTISFSNNTNFGGMAGLASLSIFDGGNQLLDNILRINTTGLTGPIQFVSSNRSPLHPSYDILNVHATGYRTIGYWSNYSGLSVTTPEKLHRKTSIRSVSNQHLYNVTWPGNTRERPRGWVFPHSGRQLRIGVPNRASYQGIVSQINGTHVVQGYCIDIFLAAIKLLPYPIQYRFILFGEGHKNPSYYDLVNMIASDVFDAAIGDIAIVTDRTKIVDFTQPYIESGLVVVAPVQRLKSSSWAFLRPFTAPMWGVTALFFLLIGAVIWILEHRTNDEFRGPPKTQIVTVLWQARLAFKLLVIHSFLACTSRFSLST* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0032 575 Gene3D - 384 500 - -
Amo07g0032 575 SMART GluR_14 390 563 IPR001320 GO:0015276|GO:0016020
Amo07g0032 575 Gene3D - 73 342 - -
Amo07g0032 575 PANTHER GLUTAMATE RECEPTOR 3.6 10 551 - -
Amo07g0032 575 SUPERFAMILY Periplasmic binding protein-like II 367 513 - -
Amo07g0032 575 Pfam Ligated ion channel L-glutamate- and glycine-binding site 405 491 IPR019594 GO:0004970|GO:0016020
Amo07g0032 575 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 551 - -
Amo07g0032 575 Gene3D - 501 568 - -
Amo07g0032 575 PRINTS Metabotropic glutamate GPCR signature 93 110 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo07g0032 575 PRINTS Metabotropic glutamate GPCR signature 77 93 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo07g0032 575 PRINTS Metabotropic glutamate GPCR signature 26 52 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo07g0032 575 PRINTS Metabotropic glutamate GPCR signature 58 77 IPR000337 GO:0004930|GO:0007186|GO:0016021
Amo07g0032 575 Gene3D - 13 317 - -
Amo07g0032 575 Pfam Receptor family ligand binding region 13 326 IPR001828 -
Amo07g0032 575 SUPERFAMILY Periplasmic binding protein-like I 13 381 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0032 Amo-Chr7 423839 425662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0032 2 550 Ion Channels AT4G35290 61.002 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0032 K05387 - gmx:100793969 883.248