Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0030 ATGTTTACCCAAAAAAGAAGGAAAGAAGAGAGAGAAAAAGATACAAAAGAGAAAACGGGGGTGGGTGGCTACACGACTTCGTCGGGAAGTGGGAACATCAGCTCCGTAAGCAAGTTCTCCGATGATCATTATCCCGACGGCCAGATCCTACCTGCCGCAAATCTCAGGATCTTCACCTTCGCAGAGTTGAAGGCTGCCACTAGAAATTTCAGACTTGACACCGTGCTTGGCGAGGGAGGTTTCGGCAAGGTCTACAAGGGGTGGCTCGAAGACAAGCCATCCTCCAAGAATGCAAATGGAACCGTCATTGCCGTCAAAAAATTGAACTCCGAAAGCTTACAGGGGCTTGAGGAGTGGAAGTCAGAAGTAAATTTTCTGGGACGCCTCTCTCATCCTAACCTTGTTAAGTTGTTGGGATACTGCTTGGAGGAAGCAGAACTTCTTCTCATCTATGAATTTATGCAGAAGGGCAGTTTGGAAAACCACCTATTCGGAAGGGGCTCTGCTGTTCAACCACTTCCATGGGATATTAGGCTTAAGATTGCAATCGGAGCAGCTCGTGGCCTTGCCTTCTTGCATACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATACTGCTCGATGGGGCCTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCTAGTCGATCCCATGTGACAACTAGGGTGATGGGCACATATGGTTATGCAGCTCCTGAATATGTCGCTACAGGGCATCTGTATGTGAAGAGTGACGTGTATGCATTTGGAGTAGTTTTGGTGGAGATGCTAACAGGGCTACGAGCACTTGACCCAAACCGCCCAAGTGGGCAACATAATCTAACAGATTGGATCAAACCATACCTGCATGATAGAAGAAAGCTGAAAAGCATTATGGATTTTCGGTTGGAAGGAAAATATCCATCCAAAGTTGCATTTCGTATAGCTCAGCTTGCGCTGAGATGTCTTGAAACTGAGCCCAAACAGCGGCCGTCAATGAAGGAAGTTTTGGAGAGCTTGGAGCGATTTCATGCTGCCAATGAGAAACCTATGGAGCCCAAATCTGGTTCTAGTCATACTCATAGCCGTCGAGGTCAGCAAGCTGTGCACCATCGTTCTCCACTCCATCCATAG 1161 0.4711 MFTQKRRKEEREKDTKEKTGVGGYTTSSGSGNISSVSKFSDDHYPDGQILPAANLRIFTFAELKAATRNFRLDTVLGEGGFGKVYKGWLEDKPSSKNANGTVIAVKKLNSESLQGLEEWKSEVNFLGRLSHPNLVKLLGYCLEEAELLLIYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGAYNAKISDFGLAKLGPSASRSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYAFGVVLVEMLTGLRALDPNRPSGQHNLTDWIKPYLHDRRKLKSIMDFRLEGKYPSKVAFRIAQLALRCLETEPKQRPSMKEVLESLERFHAANEKPMEPKSGSSHTHSRRGQQAVHHRSPLHP* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0030 386 MobiDBLite consensus disorder prediction 348 368 - -
Amo07g0030 386 ProSitePatterns Protein kinases ATP-binding region signature. 76 107 IPR017441 GO:0005524
Amo07g0030 386 MobiDBLite consensus disorder prediction 348 386 - -
Amo07g0030 386 Gene3D Phosphorylase Kinase; domain 1 54 153 - -
Amo07g0030 386 SUPERFAMILY Protein kinase-like (PK-like) 47 349 IPR011009 -
Amo07g0030 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Amo07g0030 386 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g0030 386 Gene3D Transferase(Phosphotransferase) domain 1 154 375 - -
Amo07g0030 386 CDD STKc_IRAK 76 352 - -
Amo07g0030 386 PANTHER BNAA09G08980D PROTEIN 21 381 - -
Amo07g0030 386 Pfam Protein tyrosine and serine/threonine kinase 72 349 IPR001245 GO:0004672|GO:0006468
Amo07g0030 386 PANTHER OS01G0588500 PROTEIN-RELATED 21 381 - -
Amo07g0030 386 MobiDBLite consensus disorder prediction 1 19 - -
Amo07g0030 386 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0030 Amo-Chr7 404229 408158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0030 53 350 Receptor kinase-like Gene Family AT4G02010 51.325 1.88e-99 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo07g0030 PK_Tyr_Ser-Thr 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0030 - - vun:114194495 613.609