Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3118 ATGAATGGTGACGGGAAAATCCCTGTTGCTCCATCGGAGGAACACATTGATGGTGCTCAGAAGAATAGAGCATTGCATGGGAGGACTACTGGTCCAACAAGGCGTTCTACAAAAGGGAATTGGACACCTGAACAGGATGAGATCTTGCGGAAGGCTGTTCAGCATTTCAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTACATAGGTGGCAGAAAGTCTTAAATCCTGATCTTGTCAAGGGCCCATGGTCTAAGGAGGAAGATGAAGTAATTATTGAATTGGTGAATAAATATGGACCTAAAAAATGGTCTACTATTGCTCATCATTTACCAGGACGCATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGGTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGACCTTAATCCGTGCTCATCAAATTTATGGAAACAAATGGGCTGAATTAACGAAGTTCTTGCCTGGGAGGACAGATAATTCTATTAAGAACCATTGGCACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGGTTGCTTGCTCAGTTTCAATCTGCACCACTTGCTGGAAATCCTGATCAACAGATGGTTTTAACTTCAGAGATGCACTCCGTTGGAGATGGTAATGGTCCTAAGAGGACTGATAGAGAGGATGTTTCAGAGTGTAGCCAAGAATCAGCTGATTCTGCTGGATTGACTAGTAATCTTGATCTACAAACTCGAGAGGTGTATAAGCCAGAGGAAGAATCTATTCTAGGAAAGGATCATAATCTGACTCAAGCATCCTGTCCACAGCATTACTACATATCTCTTGATGATGTGGATATCTGCATCCCAGAAGTTGCTTGCCAAGATGCTTCCTCTTCTCAATTTGCTGAGCAGATATGCTCACACAAATCTGGAAATGCCCTAACTGGGGATTACCAGTTTAATTGTGTGGATAATAGTGAAATGTGTAACATGGTAAATGTTCCCTTTCAGACTGAGGGGTTAGGTATTTCAACTTTGATGAGACCTGCATCTATGGATCCTGCTAAGCCAAATAACATGTCAATATCTGAGGATGAATGTTGCAGATTCCTATTTTCGGAGGCAGTTAGTGATGGATGCTTTTCTCCCAGAGTTTATATTAAAGACATGGACATGGTTGATTTTTCTGGATGCAATATATTCGTTTATGCTGCTGAAGACAACAAGTTATTAGGGAAAGAGGATCATCAAATTGTCTCTGGTGGACCTGATAATGTCATTTCTTCTAATGGCACATCCAGTTCTCCTTGTGTTGACAATATAGATAGTGAAGTAAAGCAAGAGCAACCAGAAACTCCGAAGGATTCTTCAAAATTGGTCCCTGTAAATAGTTTTGGTTATGGATCAAACTCTAAGGTAACTTGTTATGCAAAATATGAGAAGTTGAATGAGCATTCAAAAAAGGAAGATACAGGAACTTTATGCTACCAACCGCCCTGTTTTCCAAGCTTGGATATTCCTTTTCTAAGCTGTGATCTTGCACAATCTGAGCCTGATATGCAGCAAGAATTTAGTCCCCTTGGTATCCGCCAGCTTCTGATGTCTCCTGTAACCTGTCTAACTCCTTTCAGGTTGTGGGACTCACCCTCTGGTGGTGATAATCTAGATGCCTTGTTTAAAAGTGCAGCCAAAACTTTTACTGGTACACCATCCATATTAAGTAAACGACACCGAGATTTGTTATCACCACTTTCAGATAAAAGAACTGACAAGAAACTTGTGACAGACATGCCATCCAGCTTGATAAAAAGCTTTTCCAGCTTGGACTTTATGTTTGATGACAATGAGAATCGGGAGGCAGATATGATTTCTCCAACTTCATTACAAAAATGGAGCATTGCTGTGTCTGTTGATGATGATAAAGAAAATTGTGGTCAAACTGTTAAAGATAAACAAGTAGAAGAGAAAAATAATTCTGCCAATTTGGACGAAAATAACAGAGAAAATGGGACTGTAAAAAATAGCTCTCAGGATAGCCTTAAGCATCAAGTTGATTCAAAGATGAAGAAGATTGATATTGACACTGATAATGATGATGATAACGATAATGATAATGTTGAACAGCCTTCTGGAATTTTGATTGAACGTAATATGAATGACATAGCACCAAATTCTCCTGGATTAGACACAGTTCTAGGTTCAAGTGCTCGAACTCCCAAGAACTTGAGCAATAGGAGGTTGGAAGCAGTTCCGAATCAGCGCAGTCCATGCTCAAGGGTCAAGTGTGTCCGGGCAAAGGAGCATGAAAAGCTTTCAGTTGATGTCACTTGTGTAGGGGCGACTTCAGGGAAACAAGCCAAAAATGATGGTGGTTTTGAAACAAGTAGCATATTTGGTGACACTCCTTTTATGAAAAGCATTAAATCACCTTCTGCATGGAAATCTCCATGGTTCATCAACGCAACATTTCTGTGCAGCCCCAGGATTGCTACTGAAATTGCAATTGAGGATTATGGGTACTTAATGAGCTCAGGCAATAGAAGCTATGACGCCATCGGTCTGATGAAACAGATCAGTGAAAAAACTGCTGCTACATGTGCTAATGCTCAAGAAGTTTTGGAAAATAAAACTCCTAAAGCTTTGCCTAAAAATGCATCTTTAAATGACAAAGAAGGTGGTCAGGAAGATAATGATCTGCAGAAACAGCCTGCTAAGCATTCTCAGATGGAACGACGCATACTTGACTTTAGTGAATGTGAAACAACACCAAGCAAAGGTGATAACAGCAAATCCTCACCTGTGAACTTCTCAAGCCCTTCTTCATATTTGTTGAAGGGTTGTAGATAA 2877 0.4015 MNGDGKIPVAPSEEHIDGAQKNRALHGRTTGPTRRSTKGNWTPEQDEILRKAVQHFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPDLVKGPWSKEEDEVIIELVNKYGPKKWSTIAHHLPGRIGKQCRERWHNHLNPGINKEAWTQEEELTLIRAHQIYGNKWAELTKFLPGRTDNSIKNHWHSSVKKKLDSYLASGLLAQFQSAPLAGNPDQQMVLTSEMHSVGDGNGPKRTDREDVSECSQESADSAGLTSNLDLQTREVYKPEEESILGKDHNLTQASCPQHYYISLDDVDICIPEVACQDASSSQFAEQICSHKSGNALTGDYQFNCVDNSEMCNMVNVPFQTEGLGISTLMRPASMDPAKPNNMSISEDECCRFLFSEAVSDGCFSPRVYIKDMDMVDFSGCNIFVYAAEDNKLLGKEDHQIVSGGPDNVISSNGTSSSPCVDNIDSEVKQEQPETPKDSSKLVPVNSFGYGSNSKVTCYAKYEKLNEHSKKEDTGTLCYQPPCFPSLDIPFLSCDLAQSEPDMQQEFSPLGIRQLLMSPVTCLTPFRLWDSPSGGDNLDALFKSAAKTFTGTPSILSKRHRDLLSPLSDKRTDKKLVTDMPSSLIKSFSSLDFMFDDNENREADMISPTSLQKWSIAVSVDDDKENCGQTVKDKQVEEKNNSANLDENNRENGTVKNSSQDSLKHQVDSKMKKIDIDTDNDDDNDNDNVEQPSGILIERNMNDIAPNSPGLDTVLGSSARTPKNLSNRRLEAVPNQRSPCSRVKCVRAKEHEKLSVDVTCVGATSGKQAKNDGGFETSSIFGDTPFMKSIKSPSAWKSPWFINATFLCSPRIATEIAIEDYGYLMSSGNRSYDAIGLMKQISEKTAATCANAQEVLENKTPKALPKNASLNDKEGGQEDNDLQKQPAKHSQMERRILDFSECETTPSKGDNSKSSPVNFSSPSSYLLKGCR* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3118 958 PANTHER MYB PROTEIN-RELATED 316 434 - -
Amo06g3118 958 PANTHER MYB PROTEIN-RELATED 9 252 - -
Amo06g3118 958 PANTHER TRANSCRIPTION REPRESSOR MYB5 316 434 - -
Amo06g3118 958 PANTHER TRANSCRIPTION REPRESSOR MYB5 9 252 - -
Amo06g3118 958 PANTHER TRANSCRIPTION REPRESSOR MYB5 517 957 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 431 450 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 222 258 - -
Amo06g3118 958 PANTHER MYB PROTEIN-RELATED 517 957 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 228 243 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 432 450 - -
Amo06g3118 958 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Amo06g3118 958 SMART sant 37 86 IPR001005 -
Amo06g3118 958 SMART sant 89 138 IPR001005 -
Amo06g3118 958 SMART sant 141 189 IPR001005 -
Amo06g3118 958 MobiDBLite consensus disorder prediction 931 952 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 1 41 - -
Amo06g3118 958 CDD SANT 92 136 IPR001005 -
Amo06g3118 958 MobiDBLite consensus disorder prediction 899 928 - -
Amo06g3118 958 Gene3D - 143 202 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 690 706 - -
Amo06g3118 958 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Amo06g3118 958 Gene3D - 90 141 - -
Amo06g3118 958 MobiDBLite consensus disorder prediction 885 958 - -
Amo06g3118 958 ProSiteProfiles Myb-like domain profile. 85 136 IPR001005 -
Amo06g3118 958 SUPERFAMILY Homeodomain-like 87 183 IPR009057 -
Amo06g3118 958 Gene3D - 37 89 - -
Amo06g3118 958 SUPERFAMILY Homeodomain-like 36 98 IPR009057 -
Amo06g3118 958 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 140 IPR017930 -
Amo06g3118 958 MobiDBLite consensus disorder prediction 673 689 - -
Amo06g3118 958 CDD SANT 40 84 IPR001005 -
Amo06g3118 958 MobiDBLite consensus disorder prediction 244 258 - -
Amo06g3118 958 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 191 IPR017930 -
Amo06g3118 958 Pfam Myb-like DNA-binding domain 38 84 IPR001005 -
Amo06g3118 958 Pfam Myb-like DNA-binding domain 142 184 IPR001005 -
Amo06g3118 958 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Amo06g3118 958 MobiDBLite consensus disorder prediction 661 718 - -
Amo06g3118 958 CDD SANT 144 184 IPR001005 -
Amo06g3118 958 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3118 Amo-Chr6 98278821 98283778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3118 1 958 MYB Transcription Factor Family AT4G32730 39.981 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g3118 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3118 - K09420 ahf:112755435 1854.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g3118 06 98278821 98283778 Amo20g3002 20 132480398 132486320 PCT
Amo20g3002 20 132480398 132486320 Amo06g3118 06 98278821 98283778 PCT