Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3107 ATGGACCCCAAATCTTGCGGCGTTATGTCAGCACCGTCGTTATTAKCCGGCGACTACTGTGACTTCCGCCGTGCTCCGACGGAGCTCGATCTGGAAGTCGAAGAATTCATGAAGACTTGGATGGCGGAWGCACCGAACGAGGAACACGCCGACGACAACGACTTGAAACCTTGTATGACGGATCCGTTCATCGGCAGCGGCGGCGGTGACGGTGGCGTTCCCTCCGCCTCCGCCTCCGCCGCTTTCCGAAACCCGGATGTGGTGGTGACTACATTTTCGACCTGTACTAGTGGAGTGACAGATAATAATAACAATATTAATTATAATAACAGTACTCAACAGCAGCAGCAGCTTGTGTGCTCTCAGAACCTCACTCGCAACCATTCAACTATTGATTCTCAATCATCCATTTGTGGTACAGCTACTGTTGGAAGCCCAGTGTCTGCTAATAAACCAAACGGCGGCAGAGGAAGCGAAGGCAAAGGAGGGACCACGTGCGGTTCCTCATCACGTGAGGCGTCCGATGAGGATGATGAGGCAGGTCCATGTGAAGAAAGCACAAACCCTATTGATATGAAGCGCCTCAGAAGGAAGGTTTCTAATCGCGAGTCTGCTCGGAGGTCTAGAAGAAGGAAGCAAGCTTATTTGACTGACCTTGAGTCTCAGGTTGAACAGCTGAGGTTGGAAAATGCAACCCTGTACAAACAGCTTACAGATGCTAGCCAACACTTTCGTGATGCTGATACAAATAACCGAGTTCTTAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAATTAGCGGAGGACATGGTTGCTCGAAGCTCTTTCACTAATCTGAACAACCAGCTAATCCAGAATCAGCGGGGTCAGATGAACACCAACAATAATAATTTGCGGCGCGTGGCACATGTTTCGCCAACGATTACTGTCCATGGAAATGACTCCTCATATGGAAGCTGCATCACTAGTGTTGATGGACAAAACTCAGCCCATCTTGGAGGACTTGCCAGAAACTTGGACATAACTAATAATAATAATAATAATAACAACTATAGTGATTATAATGCAGTCATAAGCGATGCTGTAAGCTCTGTCACTAACTTATGGCCATGA 1116 0.474 MDPKSCGVMSAPSLLXGDYCDFRRAPTELDLEVEEFMKTWMAXAPNEEHADDNDLKPCMTDPFIGSGGGDGGVPSASASAAFRNPDVVVTTFSTCTSGVTDNNNNINYNNSTQQQQQLVCSQNLTRNHSTIDSQSSICGTATVGSPVSANKPNGGRGSEGKGGTTCGSSSREASDEDDEAGPCEESTNPIDMKRLRRKVSNRESARRSRRRKQAYLTDLESQVEQLRLENATLYKQLTDASQHFRDADTNNRVLKSDVEALRAKVKLAEDMVARSSFTNLNNQLIQNQRGQMNTNNNNLRRVAHVSPTITVHGNDSSYGSCITSVDGQNSAHLGGLARNLDITNNNNNNNNYSDYNAVISDAVSSVTNLWP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3107 371 CDD bZIP_plant_GBF1 194 245 IPR045314 GO:0003700|GO:0006355
Amo06g3107 371 Gene3D - 192 247 - -
Amo06g3107 371 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 254 IPR004827 GO:0003700|GO:0006355
Amo06g3107 371 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Amo06g3107 371 SMART brlzneu 189 253 IPR004827 GO:0003700|GO:0006355
Amo06g3107 371 Pfam bZIP transcription factor 192 239 IPR004827 GO:0003700|GO:0006355
Amo06g3107 371 PANTHER BASIC LEUCINE ZIPPER 9 30 371 - -
Amo06g3107 371 Coils Coil 209 236 - -
Amo06g3107 371 Coils Coil 251 271 - -
Amo06g3107 371 MobiDBLite consensus disorder prediction 48 77 - -
Amo06g3107 371 SUPERFAMILY Leucine zipper domain 193 242 IPR046347 GO:0003700|GO:0006355
Amo06g3107 371 MobiDBLite consensus disorder prediction 135 213 - -
Amo06g3107 371 MobiDBLite consensus disorder prediction 135 152 - -
Amo06g3107 371 PANTHER BASIC LEUCINE ZIPPER 63 30 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3107 Amo-Chr6 98127559 98134151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3107 106 371 bZIP Transcription Factor Family AT5G24800 46.125 9.14e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo06g3107 bZIP_1 6.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3107 K25784 - gmx:778193 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2477 10 86616789 86622553 Amo06g3107 06 98127559 98134151 PCT
Amo20g3054 20 134138957 134144015 Amo06g3107 06 98127559 98134151 PCT