Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3081 ATGGCTGTGGAGTTTATAAGCGGTTATGATTGTGGTGGTGATGGTGATCATAGTTTTGTCAGTAACAACGACGCAACGACGGCGGCGGCGGTGGGAGAAGCAGCTTGTGGTGGCATTGAGAGTGTTGAGAAGCTCATGGACATGATTTCAGAACAAAAACATGAAGAAAATGATGATTATTCATCACTTGAAAAAGAAGAATTTGCAGGTGTTGCTGTTTCAATTCTTGACAACAACAAACCAAGAACAAGATTATTGGGCCATGCTCGTTTCAGAAGAGCTCCATCATCAACTACTCTTCTTCCTAATAATCTTCAATTGCAGCAAATGGATCATGAAAAAGAAACAATCAATGCAACAAGATTTTTTGAATTATCCAAAGAAAAAGATGGTTTTTCTCCACAACAAAGAAGTAAGGAGGAGCAAGTTTCTTCTTCTGCTTTCAAGCTTTATTGTCCTATATCAATTCTTCCTCCTCTGCCTCAAAGGAAGAGAAACAATAATTACCATGATTACCCTTCAAGATTTTCCCATAATCAAAAGAACAATAATGTTGAAGCAAACAATGGCTCTTCTACAAGCATTGACTTTTCTACAACAAACTCTTGTACTTACTTGTCAACGTTGACTAATAATATTGATGATGATCATGGCTTCCAAATTCAAAGGGTGTCTCTTAATAAGGGTTCTTCTTCTTCTTATATGCAAAAACCACCCTTATCCAATTCATCTTTGAATAAGAGGAAGTGCAATTCATTGGATAATAATGTTCAATCCTCCTCTTCAAAGTGCCATTGCTATAAGAAAAGGAAATCGAAGTTGAAGAGAGTGATTAGAGTGGCAGCAATTAGTTCAAAGACTGCAGATATTCCATCAGATGATTTCTCTTGGAGAAAATATGGTCAGAAACCTATTAAGGGCTCTCCTCACCCTAGAGGTTATTACAAATGTTCGAGCGTGAGAGGATGCCCTGCACGTAAACACGTGGAGCGTGCAGTAGACGATCCAAACATGCTTGTTGTAACTTATGAAGGAGAACACAATCACACATTAACACATGATGATTATGCTAATGATGCTGTTATCCTCCAATCATCTTAA 1101 0.3787 MAVEFISGYDCGGDGDHSFVSNNDATTAAAVGEAACGGIESVEKLMDMISEQKHEENDDYSSLEKEEFAGVAVSILDNNKPRTRLLGHARFRRAPSSTTLLPNNLQLQQMDHEKETINATRFFELSKEKDGFSPQQRSKEEQVSSSAFKLYCPISILPPLPQRKRNNNYHDYPSRFSHNQKNNNVEANNGSSTSIDFSTTNSCTYLSTLTNNIDDDHGFQIQRVSLNKGSSSSYMQKPPLSNSSLNKRKCNSLDNNVQSSSSKCHCYKKRKSKLKRVIRVAAISSKTADIPSDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPNMLVVTYEGEHNHTLTHDDYANDAVILQSS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3081 366 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 22 366 - -
Amo06g3081 366 SUPERFAMILY WRKY DNA-binding domain 287 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g3081 366 MobiDBLite consensus disorder prediction 172 193 - -
Amo06g3081 366 MobiDBLite consensus disorder prediction 162 193 - -
Amo06g3081 366 MobiDBLite consensus disorder prediction 228 258 - -
Amo06g3081 366 Pfam WRKY DNA -binding domain 293 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g3081 366 Gene3D WRKY domain 275 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g3081 366 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 366 IPR044810 GO:0003700
Amo06g3081 366 ProSiteProfiles WRKY domain profile. 286 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g3081 366 Coils Coil 46 66 - -
Amo06g3081 366 Pfam Plant zinc cluster domain 247 289 IPR018872 -
Amo06g3081 366 SMART WRKY_cls 291 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3081 Amo-Chr6 97731923 97735312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3081 237 349 WRKY Transcription Factor Family AT2G24570 63.333 8.58e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g3081 WRKY 5.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3081 - - lja:Lj0g3v0162929.1 289.656