Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g3047 | ATGCCGGGATTAACGTGCAACGCTTGCAACAAGGAATTCAATGACGATTCAGAGCAAAAGCTTCATTACAAGTCTGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTCCCTGGGGTGACAGAAGCTCTGTTTCTGGCTAGACAATCTGCTCTTGCTCAAGAGAAAGATAAGTCTAATGAAACCCCTATGCTCTATAGCTGTGGTCTTTGCGGGAAGGCGTATAAAAGTTCCAAGGCTCATGCCGAGCACCTTAAATCACGGGGTCATATTACGCGAGCATCTGAAGGAACTAGCCAATCAGATGAGAAGGCGATAGTCAAGCCACTTCCACGTCGTGTTGCAAATAGGCCTTCCCCAAGAAGTGAGGTAGACAAGTCTGACAATGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTCATGATGCTGCAAAGTCTATCACTGATTTGGACATGAATGATCATGACGGCAATGCTGATATGGACGAAGATGATGATAGTTTTGAGGAGTTGGATCCATCATGTTGCTTTATGTGTGATAAAGAGCACAATACAATTGAAAGCTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAATATTTGAAGGATGCTAAAGGCCTTTTAACTTATCTTGGGCTTAAGGTCAAAAGGGACTATATGTGTCTCTACTGCAATGACCGCTGTTATCCTTTCAGCAGCTTGGAAGCAGTGAGGAAGCATATGGAAGCTAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGACGAGGAAGAAGTGGAGTTAGAAGAATTCTACGATTATAGCAGCAGTTATGTGGACGAGCAAGGCAAGCAGCTGGTTGTATCCGGCGATGCAGTTAACAATGTAGAACTTGGCGGTGGTGAGCTCATAATCACCAAGAAAACTGATCGTGGAACATCAACCACAACTCTTGGTTCCCGGGAATTTCTGCGTTATTATCGTCAGAAACCTCGACCTTCATCTGCAAATAGTATGGCCATTACTGCTGCATTGGCTTCAAGGTATAGAGGCATGGGCTTGGCTACGGTTCAATCAAGGGAACAAATGGTGAGGATGAAAGTACTGAAGCAAATGAACAAGTCTGGTGTGGAGAATATGCGCACCAAGATAGGAATGAAGAACAATGTTATAAGGAACTTACCAAAGAATGTTCCATATTAG | 1227 | 0.4417 | MPGLTCNACNKEFNDDSEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSALAQEKDKSNETPMLYSCGLCGKAYKSSKAHAEHLKSRGHITRASEGTSQSDEKAIVKPLPRRVANRPSPRSEVDKSDNEESEDEWEEVDPEDDLVHDAAKSITDLDMNDHDGNADMDEDDDSFEELDPSCCFMCDKEHNTIESCMVHMHKHHGFFIPDVEYLKDAKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDEEEVELEEFYDYSSSYVDEQGKQLVVSGDAVNNVELGGGELIITKKTDRGTSTTTLGSREFLRYYRQKPRPSSANSMAITAALASRYRGMGLATVQSREQMVRMKVLKQMNKSGVENMRTKIGMKNNVIRNLPKNVPY* | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g3047 | 408 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 408 | IPR040025 | - | |
| Amo06g3047 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 92 | IPR013087 | - | |
| Amo06g3047 | 408 | MobiDBLite | consensus disorder prediction | 84 | 147 | - | - | |
| Amo06g3047 | 408 | MobiDBLite | consensus disorder prediction | 130 | 145 | - | - | |
| Amo06g3047 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 98 | IPR036236 | - | |
| Amo06g3047 | 408 | SMART | c2h2final6 | 182 | 204 | IPR013087 | - | |
| Amo06g3047 | 408 | SMART | c2h2final6 | 233 | 260 | IPR013087 | - | |
| Amo06g3047 | 408 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Amo06g3047 | 408 | SMART | c2h2final6 | 68 | 92 | IPR013087 | - | |
| Amo06g3047 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Amo06g3047 | 408 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 408 | - | - | |
| Amo06g3047 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
| Amo06g3047 | 408 | Pfam | C2H2 type zinc-finger (2 copies) | 184 | 285 | IPR041661 | - | |
| Amo06g3047 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 97 | IPR013087 | - | |
| Amo06g3047 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 170 | 250 | IPR036236 | - | |
| Amo06g3047 | 408 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676|GO:0008270 | |
| Amo06g3047 | 408 | Gene3D | Classic Zinc Finger | 4 | 89 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo06g3047 | 1 | 408 | C2H2 Transcription Factor Family | AT4G31420 | 66.506 | 0.0 | 536 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Amo06g3047 | zf-C2H2_2 | 2.7e-25 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo06g3047 | K14816 | - | gmx:100796317 | 663.299 |