Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3016 ATGGGAGAGGTGGCAGTAATGCGCTCTGAGCCACTGCAGTTTGAGTGCAATGATATGAAGCATCTGACAGAGGGAGACGCTTATGCCACAGAATCAAATGCAGAGATTGATCATAGGGAAGAATCAAGCCAATCAACTGATCATGAAAAGACTAATGACTTGCGTGAGAAAGGATACATGGAGTACGGATGTCAACATTATCGGAGAAGATGCTGTATCAGGGCCCCTTGTTGCAATGAGGTTTTTGATTGCCGCCACTGTCACAATGAGGCAAAAAATGATATCAGCATTGACCAGAAACTTAGACATGACATTCCGCGCCACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACAGAACAAGAGGTGCAGCAGAACTGTATCAATTGTGGTGTATCAAAGCAACAATATCATTGCGATGGATGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTATTCAATCCTGCTAAAAGATAGTCACCCTTGCATTGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCCAGAAATGATGTCACTGTTATGCCCTGTGGACATACAATCCATAAGAGCTGCTTGGATGAAATGAGAGAACATTACAAATATGCATGCCCTCTGTGCTCAAAGTCGGTGTGCGATATGTCGAAGGTTTGGGAGAAATTTGACTTGGAGATGGCTGCTATACCGATACCTGAACCATATCAGAATAAAATGGTTTGGATCTTGTGCAATGATTGTTGCAAAACATCTCGAGTTCAGTTCCATTTTGTGGCTCAAAAATGTTTGAACTGCAAATCCTACAACACACGACAGACCCGAGGCCGAGACTGCTGA 888 0.4324 MGEVAVMRSEPLQFECNDMKHLTEGDAYATESNAEIDHREESSQSTDHEKTNDLREKGYMEYGCQHYRRRCCIRAPCCNEVFDCRHCHNEAKNDISIDQKLRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVSKQQYHCDGCGICRTGGRENFFHCYKCGCCYSILLKDSHPCIEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLDEMREHYKYACPLCSKSVCDMSKVWEKFDLEMAAIPIPEPYQNKMVWILCNDCCKTSRVQFHFVAQKCLNCKSYNTRQTRGRDC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3016 295 Pfam Ring finger domain 182 225 IPR001841 -
Amo06g3016 295 SUPERFAMILY CHY zinc finger-like 61 133 IPR037274 GO:0008270
Amo06g3016 295 SUPERFAMILY Zinc hairpin stack 128 176 IPR037275 -
Amo06g3016 295 Pfam CHY zinc finger 64 144 IPR008913 GO:0008270
Amo06g3016 295 MobiDBLite consensus disorder prediction 33 52 - -
Amo06g3016 295 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Amo06g3016 295 ProSiteProfiles Zinc finger CTCHY-type profile. 110 182 IPR017921 -
Amo06g3016 295 SUPERFAMILY RING/U-box 182 231 - -
Amo06g3016 295 Pfam Zinc-ribbon 230 288 IPR039512 -
Amo06g3016 295 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 292 - -
Amo06g3016 295 ProSiteProfiles Zinc finger RING-type profile. 183 226 IPR001841 -
Amo06g3016 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 228 IPR013083 -
Amo06g3016 295 Gene3D - 254 295 - -
Amo06g3016 295 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 25 292 - -
Amo06g3016 295 SMART ring_2 183 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3016 Amo-Chr6 96652046 96655224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3016 62 292 C2H2 Transcription Factor Family AT3G18290 36.508 1.21e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3016 K10144 - gmx:100803569 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g3016 06 96652046 96655224 Amo08g2028 08 32713928 32720628 PCT