Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3012 ATGCACGTTCTCGCACCAGAAGTGCATATTGAAGGTCCACCTGACACATCTCCGTTGTTGATGGAGCGGCTGGGTAGCTTGAACAGCAATCAGCATATGATCGTGCAGCCGGAGAGGTTGAATGACAATCAGCATATCATAGACATTAACATAGCTGGAAACGGTGATGCTTCCACTTCAGGCTCAGCTCATGATAGACATTCTAATGGTGTGGATACATCACAGCATGTAGAGAGAGCGGGCAGTGTGAGAGTACCTGTTTCGCAGCCTTCGGTTTTATCCAACAATGGATCCAATGGATCAAACTCCAGGAATTCTTCCTTCATCAGACGTGGAGATTCACGCCGGAGTAGGAGTCCAGTGCATTCGGGGTTGTGGATATCTGTAGAACTAGCACTCTTAGTAAGTCAAATTGTTGCATCAATTGTTGTATTGTCTTTGTCAAGGCACGAGCATCCACGTTCCCCATTGTTTGCGTGGATTGTGGGTTATGCAAGTGGTTGTCTTGCTACCCTACCTCTGCTTTATTGGCGGTATTATCATCATAACCAAAGTCGAGATCAAGATTCACCCCAAACTCGTCAAACATCTCCTCGGGTTAATGATCCTTCAGGGACATTTCATTCCAGTTCCAGAAGTAATGGAGGAGCAGATGGTCAAGGTGCTGCTTCAATGTCCAGAGGCAATCAAGCTTCACCATTGACAAACAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTATATGGTTCGTTGTTGGAAATGTATGGATCTTTGGAGGACGTTCGTCTGCTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTCGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATTATCTCCATCCTTGGCGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATAAATGCCCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGCGACAGTAACTCAGCTGCTGTTGATGGGGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGAGTGATATCTGGAGATGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGATGAGCTGCGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGAGTGTGTAGACAAGTGGTTAAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACCGGATCGGGTGCCGCAGAAGGTGCCAGCCAATAG 1311 0.4455 MHVLAPEVHIEGPPDTSPLLMERLGSLNSNQHMIVQPERLNDNQHIIDINIAGNGDASTSGSAHDRHSNGVDTSQHVERAGSVRVPVSQPSVLSNNGSNGSNSRNSSFIRRGDSRRSRSPVHSGLWISVELALLVSQIVASIVVLSLSRHEHPRSPLFAWIVGYASGCLATLPLLYWRYYHHNQSRDQDSPQTRQTSPRVNDPSGTFHSSSRSNGGADGQGAASMSRGNQASPLTNRRMKTLVEYFKISLDCFFAIWFVVGNVWIFGGRSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRSGDSNSAAVDGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGENLTGSGAAEGASQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3012 436 MobiDBLite consensus disorder prediction 185 232 - -
Amo06g3012 436 CDD RING-H2_RNF111_like 376 418 - -
Amo06g3012 436 MobiDBLite consensus disorder prediction 81 120 - -
Amo06g3012 436 SMART ring_2 377 417 IPR001841 -
Amo06g3012 436 MobiDBLite consensus disorder prediction 189 232 - -
Amo06g3012 436 Pfam Ring finger domain 377 418 IPR001841 -
Amo06g3012 436 ProSiteProfiles Zinc finger RING-type profile. 377 418 IPR001841 -
Amo06g3012 436 SUPERFAMILY RING/U-box 369 424 - -
Amo06g3012 436 MobiDBLite consensus disorder prediction 87 108 - -
Amo06g3012 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 426 IPR013083 -
Amo06g3012 436 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 37 436 - -
Amo06g3012 436 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3012 Amo-Chr6 96545817 96550369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3012 110 428 C3H Transcription Factor Family AT1G80400 57.099 5.69e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g3012 - - gmx:100778728 647.506