Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2995 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCCGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAACAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCAGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGGGGTACCAATGGGTTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATACTAATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTCGCTCAGTTACACCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATGGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCAGTACGGGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACAAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2718 0.4728 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRILMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHGMHQQDRVAGAGSVTADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 873 905 - -
Amo06g2995 905 SMART WD40_4 825 864 IPR001680 GO:0005515
Amo06g2995 905 SMART WD40_4 656 695 IPR001680 GO:0005515
Amo06g2995 905 SMART WD40_4 866 905 IPR001680 GO:0005515
Amo06g2995 905 SMART WD40_4 699 739 IPR001680 GO:0005515
Amo06g2995 905 SMART WD40_4 781 819 IPR001680 GO:0005515
Amo06g2995 905 SMART WD40_4 614 653 IPR001680 GO:0005515
Amo06g2995 905 MobiDBLite consensus disorder prediction 424 456 - -
Amo06g2995 905 MobiDBLite consensus disorder prediction 378 411 - -
Amo06g2995 905 Pfam WD domain, G-beta repeat 868 905 IPR001680 GO:0005515
Amo06g2995 905 Pfam WD domain, G-beta repeat 702 739 IPR001680 GO:0005515
Amo06g2995 905 Pfam WD domain, G-beta repeat 621 652 IPR001680 GO:0005515
Amo06g2995 905 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Amo06g2995 905 Pfam WD domain, G-beta repeat 784 818 IPR001680 GO:0005515
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Amo06g2995 905 MobiDBLite consensus disorder prediction 87 121 - -
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 788 820 IPR001680 GO:0005515
Amo06g2995 905 SUPERFAMILY WD40 repeat-like 615 905 IPR036322 GO:0005515
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 873 905 IPR001680 GO:0005515
Amo06g2995 905 Pfam LisH 10 36 IPR006594 GO:0005515
Amo06g2995 905 MobiDBLite consensus disorder prediction 149 190 - -
Amo06g2995 905 SMART Lish 8 40 IPR006594 GO:0005515
Amo06g2995 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 905 - -
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Amo06g2995 905 MobiDBLite consensus disorder prediction 424 543 - -
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 748 IPR001680 GO:0005515
Amo06g2995 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 706 744 - -
Amo06g2995 905 MobiDBLite consensus disorder prediction 149 174 - -
Amo06g2995 905 ProSitePatterns Trp-Asp (WD) repeats signature. 682 696 IPR019775 -
Amo06g2995 905 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Amo06g2995 905 Coils Coil 120 145 - -
Amo06g2995 905 Gene3D - 752 905 IPR015943 GO:0005515
Amo06g2995 905 Gene3D - 597 751 IPR015943 GO:0005515
Amo06g2995 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 905 IPR044716 GO:0003714
Amo06g2995 905 MobiDBLite consensus disorder prediction 467 527 - -
Amo06g2995 905 MobiDBLite consensus disorder prediction 236 269 - -
Amo06g2995 905 CDD WD40 617 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2995 Amo-Chr6 96222642 96232584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2995 666 865 Miscellaneous Gene Families AT5G08390 26.570 3.86e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo06g2995 WD40 0.033 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2995 - - aip:107605121 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2995 06 96222642 96232584 Amo08g2045 08 33024819 33032596 PCT
Amo06g2995 06 96222642 96232584 Amo18g3380 18 135878497 135886321 PCT
Amo08g2045 08 33024819 33032596 Amo06g2995 06 96222642 96232584 PCT
Amo18g3380 18 135878497 135886321 Amo06g2995 06 96222642 96232584 PCT