Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2971 ATGATCATGGAATCTCCAGAACCTTCGAAGAACAATGCAACTTCTTCGGCCTCCACAATCAATGCCGTCGCCATCAATGACTCCCCTCAAGTTCAAGAATCACCCTTTTTCAGGTTTGTAAACAACTTATCTCCTATAAAGCAACCTGCCAAGGCTTCTCATGTGGCACAAGGCTTCGTTGGACTCAATTCTCCGCCTCTTGTATTCACATCACCGCGTATTAGTTGTCACCGTGAAACACACTTATTGGAAAGACCTTCAGGTGCTCAGTCATCAAGTCGATCAGAATCTCAAAGTGACAATAGAGGCAAGTTAATTGAAGCTCCTGGGGATTCTGCGAAATCAACTGCTGAACTGCCACTTGCAGGGGAGTTTATAACTGAAACTGTGAAGGATTTTGATGTCAAAAATGATGCAACTACCCAACACTGCAGTCCGCCGCCATCTGTTGATAAATATCTGGTTGATCCTGTGGATATTGATCAAATGTACTCTGTCAACCCAGATGAGAAACAATCTAATGATACTGAATCATCTCTGAGTAACTTAGCTCAATCAAAGAAAAGCATATCAGAAGTTGACAGCAAAGATGATCCTTGTGATAAAGCAGATAAACCTTTGATTTTGTTAGAGAAAGTTGATAAGGCTCAAACAGGGCCAGCATATGTTGAAGGGCATGATCAAGTAACAGGGGAGAAAAATGATGTTTTAATGGCTTTGCACAAGCGCATGAAGGATGATAATGACTGTACATCTCAGTTGCTTCCCGAACAGAATCTGCAGGATGTTAAAGATTGGGAAGATTGCGATGAGATGGTGTCAACCTCACATGTAGGTGCTGAGAACGTGTCACAAGATGCTTCTGAGGTTACTCTAAAGCATCATGGCCTTCGTAGACGGTGTCTACAATTTGAGGAGGCTGCATCTAATGCTCGTGGAAGTGATAAATCTTGTATGAAATCAAATGCAGCTCCAATCAAAATAAAAATGGTCAAGCTGTCTGAACCTGGCACTTCTTCCTTGTTTCCTCAAAGATGTAGTGGAAACTCAACTGTGACATGTCCCAAGCCATCAGGCATTGGATTGCATTTAAATAGCATTGTAAATGCTATGCCTCCTGGTTGTGCTGCAACTACAGGTATTAGATCATCAGATTGTTTACAAGGGAAGAAATCTGCATTGATTAGTATAAATAAAGTGGAGAACATGAAGGGACGCCTAACTTCATCAAATATAGATGGGCAATCATTAATTGATAGTGGAAATGAGAGCCAAGCCAACATTTCCTCACTACCTGTAGATTCTTTCATTTCTGGGTCTCATAGCCCTACAGAACCTGTTGCTATATGTCCTGAAAGTCTCCATGATAAGAGGAAACTAAGCCCTACAGGTGACGGATATCCTGAGGAATCAAAGCAACCTAGCCCGAGCAAGAAAAAGAAGAGAGCATCAAGCAACAATGATGATAATGGCTGTAAAAGGTGCAACTGTAAAAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTATTGCGCTGATGATTGTTCTTGCCAAAGCTGCTTGAATAGACCAGAGTATGAAAATAAAGTTATTGAAACAAGGAAACAAATTGAATCCCGTAATCCTCTTGCATTTCTTCCCAAGATTGTCCCTCAATCCACTGATCGTCCATCAAATAATATGGAGGATGCAATTCTGATGACACCTTCATCAGCCAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCAGAAAAAATATTGTGAATGTTATCAGGCTGGTGTCGGATGCTCTAGCGGATGCCGATGTGAGGGATGTAAGAATGTTTATGGCACAAAAGAAGATTATGTTGCAAGGGATCATGTTTTCAATAAAGAAAGGATGGGTAGCAGGATTGAAAATGAACCAGATGGTGCTTTTCTCAACAAACTGGAAATGGTGGCAAGCAAGTCAGATTTGTTCCATGTCTCACCTATAACGCCATCATTGCAATGCTCTGACCAAGGAAAGGAGGCTGCAAAATTCGGACTTCATTCTGGACAGCATCTACCCTCCTCTGAAACTAATGTTGATATGCTTCCCTCAAGTGCAAATTATAACAAGTCTCTGGAGAACTCGCAGAGTGTTCTTGCAAACCTGGAAACAGATGAGATGTTGGAAACTGCTTCCTATGATTGGCAAGTGGATTGCAGCGATGTAATGGATCAATCATCACCATGTGATTTGGTTGCTAACATACTTCAGGATACTCCCTTGTCAAATCCTGAATCAATGTCAAGTGCTTCACTGTTCACATCTAGTACAAAGGAGTGCGGAAACATTCCTCTATCCCAATCACAAGGACGCATTCGCCTAATATCCGGGAGCTCTCTTCGTTGGCGTGGTTCACCAAATACCCCAAGGGCTAGATTAGGTGTAAAACACCTTCAGTCTCTTGATTCTGAAAGCAGACTCTTCGACATAATGGAAGATGAAACACCAGATGTATTGAAGGAAGGTTTAACACCCACCAAGTCTGTGAAAGCAAATTCCCCAAACCAGAAGCGAGTTTCTCCTCCCCATAGTCGTCTACGCGGACTTGGTTCAAGCTCCTCTGGAGGCTTCAGAACTGGCAGGAAATTTATACTGAAATCTGTTCCTTCCTTTCCCCCATTGACACCTTGTGTTGAATCCAGAGATAATAGCAGTGAAGACTTAGGTAACAATGCCAAGTAA 2736 0.4189 MIMESPEPSKNNATSSASTINAVAINDSPQVQESPFFRFVNNLSPIKQPAKASHVAQGFVGLNSPPLVFTSPRISCHRETHLLERPSGAQSSSRSESQSDNRGKLIEAPGDSAKSTAELPLAGEFITETVKDFDVKNDATTQHCSPPPSVDKYLVDPVDIDQMYSVNPDEKQSNDTESSLSNLAQSKKSISEVDSKDDPCDKADKPLILLEKVDKAQTGPAYVEGHDQVTGEKNDVLMALHKRMKDDNDCTSQLLPEQNLQDVKDWEDCDEMVSTSHVGAENVSQDASEVTLKHHGLRRRCLQFEEAASNARGSDKSCMKSNAAPIKIKMVKLSEPGTSSLFPQRCSGNSTVTCPKPSGIGLHLNSIVNAMPPGCAATTGIRSSDCLQGKKSALISINKVENMKGRLTSSNIDGQSLIDSGNESQANISSLPVDSFISGSHSPTEPVAICPESLHDKRKLSPTGDGYPEESKQPSPSKKKKRASSNNDDNGCKRCNCKKSKCLKLYCDCFAAGIYCADDCSCQSCLNRPEYENKVIETRKQIESRNPLAFLPKIVPQSTDRPSNNMEDAILMTPSSARHKRGCNCKRSMCQKKYCECYQAGVGCSSGCRCEGCKNVYGTKEDYVARDHVFNKERMGSRIENEPDGAFLNKLEMVASKSDLFHVSPITPSLQCSDQGKEAAKFGLHSGQHLPSSETNVDMLPSSANYNKSLENSQSVLANLETDEMLETASYDWQVDCSDVMDQSSPCDLVANILQDTPLSNPESMSSASLFTSSTKECGNIPLSQSQGRIRLISGSSLRWRGSPNTPRARLGVKHLQSLDSESRLFDIMEDETPDVLKEGLTPTKSVKANSPNQKRVSPPHSRLRGLGSSSSGGFRTGRKFILKSVPSFPPLTPCVESRDNSSEDLGNNAK* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2971 911 MobiDBLite consensus disorder prediction 451 490 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 451 465 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 85 99 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 840 911 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 895 911 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 165 202 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 472 490 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 166 189 - -
Amo06g2971 911 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 904 IPR044522 GO:0003700
Amo06g2971 911 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 581 615 IPR005172 -
Amo06g2971 911 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 493 528 IPR005172 -
Amo06g2971 911 MobiDBLite consensus disorder prediction 83 119 - -
Amo06g2971 911 MobiDBLite consensus disorder prediction 844 876 - -
Amo06g2971 911 ProSiteProfiles CRC domain profile. 491 618 IPR005172 -
Amo06g2971 911 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 3 904 - -
Amo06g2971 911 SMART CXC_2 490 531 IPR033467 -
Amo06g2971 911 SMART CXC_2 578 619 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2971 Amo-Chr6 95775393 95780941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2971 817 894 CPP Transcription Factor Family AT3G22780 42.857 1.62e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo06g2971 TCR 8.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2971 K21776 - gmx:547664 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2971 06 95775393 95780941 Amo20g2415 20 112733705 112736940 PCT