Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g2960 | ATGGCAAAGAAGAAGAATCCCCACGTGTATATGGATGTTTCTATAGACGGAGATCCAGTTGAGAGGATGGTTTTTGAGCTCTTCTATGACATTGCTCCAAAGACTGCAGAAAATTTTCGTGCACTGTGTACAGGAGAAAAAGGAGTTAGCCCAAATACTGGGAAATCACTACACTACAAGGGTTCTTTCTTCCATTACATTCTGAAAGGTTCTATTGTGCGGGGTGGCGATTTTGTCAATCGAAACGGGACTGGTGGGGAAAGCATATATGGTTCAAAGTTTCCAGATGAGTCGCCTAGGCTGAAGCATGATTCTTCAGGCCTTTTATCAATGGCAATTGCTGATCGCGAAACACTGGGTTCTCATTTTATCATCACTTTAAAAGCGGATCACCATCTTGATAGAAAGCATGTAGTCTTTGGCAAGCTTGTCCACGGGCATAATGTGTTGAAGAAAATTGAAGACACAGGTGATGAAGAAGGGCATCCAACTGTGACCGTTAAAATAATTAATTGTGGTGAATTCAATGACGATGGAAAGAAGATAAATAAATCTGAAGCCAATAGTCAAGAAATGCAGCGTAAGGGAAAGCACAAAAAATCTTCAAGAGACCGAAGAAAAAGGAGAAAATACTCCTCATCAGATTCTGAGAGTTCTGATTCGGACATGGAATCTTCGGAAAGTGATAGTGATTCTGAGTCGGATGGTTCTTCATCATCTTATATAAGTTCCTCTAGTGATGACAGGCGAAGGAAGAGAAAGAGGTCTTCGAGGAAGGATAAACATAGACGTGGAAAGCGAAGAGATAAACGCCGAGATAAGAGGCGCAGGAAGCGTGACAAGAAGTCAAAACGTAGATCAAAACGGGATTCTGGTAGTCTAACTGATTCGGATAGTGGAACTAAGAGTGGCAATAGCCCTGATTGCAGAAGTCAAGCTGATGGGAAAGATCTGAAGCATAAAGATCATGCGCATAAAAATGCTGAAGATCAGTCTCCATTAAATGTGGAGAATGAATTGCCTCTTGCACATCGGAAAAAGCGGGAGGAACTGGATATGCCAGAGGAAGAATTTCCGAAGGAGAATGGAGCACGGCGCAGCAATGGCATAGGAACCAACCATCGATCTGACAGAAGTGAAGAAAGGCAGCCTGATGTGGTTGATGATCATCCAGGGAAATCTAGGAGTCGAAGCATGAGTCCTAAGCGAGCTGTGAGTAAGAGTATGAGTATTAGTCCCAGGGGTGGAAAAAGAAGCCCAAGCCCAAGTCCAAGTCCAGACAGGAGTTTGAGCAGAAGTCCAAGTCGTAGTAGAAGCCCTCCTGCTCCATCAAGGCGGAGTTTGAGCAGGAGTCCTGCTAGAAGCATAAGCAGAAGTCCTGTTAGAAGGACAAGCAGAAGTCCAGACCGAAGCATCATTAGAAGCCCAGTGAGGGGTAGGAAGGGGAGAAGTGTCAGCAGAAGCCCCATGAGAACTCGCAATCATAGAAGTATCAGTAGAAGCTCTGGGAGAATCCGTGATCGCAGTGTAGTAGAAGTCCTGTGA | 1545 | 0.4447 | MAKKKNPHVYMDVSIDGDPVERMVFELFYDIAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHYILKGSIVRGGDFVNRNGTGGESIYGSKFPDESPRLKHDSSGLLSMAIADRETLGSHFIITLKADHHLDRKHVVFGKLVHGHNVLKKIEDTGDEEGHPTVTVKIINCGEFNDDGKKINKSEANSQEMQRKGKHKKSSRDRRKRRKYSSSDSESSDSDMESSESDSDSESDGSSSSYISSSSDDRRRKRKRSSRKDKHRRGKRRDKRRDKRRRKRDKKSKRRSKRDSGSLTDSDSGTKSGNSPDCRSQADGKDLKHKDHAHKNAEDQSPLNVENELPLAHRKKREELDMPEEEFPKENGARRSNGIGTNHRSDRSEERQPDVVDDHPGKSRSRSMSPKRAVSKSMSISPRGGKRSPSPSPSPDRSLSRSPSRSRSPPAPSRRSLSRSPARSISRSPVRRTSRSPDRSIIRSPVRGRKGRSVSRSPMRTRNHRSISRSSGRIRDRSVVEVL* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 176 | 514 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 312 | 332 | - | - | |
| Amo06g2960 | 514 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 27 | 42 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 122 | 134 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 64 | 76 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 135 | 150 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 107 | 122 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 10 | 174 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 176 | 197 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 340 | 363 | - | - | |
| Amo06g2960 | 514 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 11 | 173 | IPR002130 | GO:0000413|GO:0003755 | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
| Amo06g2960 | 514 | Gene3D | - | 1 | 176 | IPR029000 | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 371 | 396 | - | - | |
| Amo06g2960 | 514 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 | 1 | 379 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 500 | 514 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 480 | 499 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 399 | 462 | - | - | |
| Amo06g2960 | 514 | SUPERFAMILY | Cyclophilin-like | 4 | 178 | IPR029000 | - | |
| Amo06g2960 | 514 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 379 | - | - | |
| Amo06g2960 | 514 | MobiDBLite | consensus disorder prediction | 251 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo06g2960 | Amo-Chr6 | 95703653 | 95712036 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo06g2960 | 25 | 175 | U-box Gene Family | AT5G67530 | 38.562 | 2.71e-20 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo06g2960 | K09566 | - | gmx:100800303 | 353.214 |