Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2919 ATGGATTTGGACAGCATTGAGTGTGTGTCATCCTCTGATGGCATGGATGAAGATGAGATCCAACACCATAACCTTCATCCTCATCATCACTCTGAGTTTTCATCTTCGAAGCCTCGCAATGGAGGCGCCAACAACAACAACATCAACAACAACAACAACAACAACAGCAACAACAATGTTATGGGCGCAACGGTGGTTATTCCTCCTGCAACCAGCGTCCATGAGTTGCTTGAATGTCCCGTTTGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCATAATGGGCATACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCGCTCGAGTTACCTTGCAAGTACTACTCCCTCGGATGTCCAGAAATATTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTATTGTCGGGGACATTCCTTTCCTTGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCACGGTATTTCATTGTTTTGGACAATACTTCTGTCTCCACTTTGAAGCATTCCAGCTAGGCATGGCCCCGGTTTACATGGCATTCCTTCGTTTCATGGGGGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTTGAGGTCGGGGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCAKGAAGTATCCGGGATAGCCACCGGAAAGTCAGGGATAGCCATGATGGTCTWATCATTCAACGAAATATGGCCTTATTTTTCTCTGGTGGAGATAGGAAGGAACTGAAACTAAGAGTTACYGGAAGAATATGGAAGGAACAACAGAATCCAGATGCCGGAGTGTGCATACCAAATCTTTGTAGCTGA 1026 0.4571 MDLDSIECVSSSDGMDEDEIQHHNLHPHHHSEFSSSKPRNGGANNNNINNNNNNNSNNNVMGATVVIPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPXSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2919 341 CDD Sina 193 321 - -
Amo06g2919 341 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 320 IPR008974 GO:0005515
Amo06g2919 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 332 - -
Amo06g2919 341 Pfam Seven in absentia protein family 121 320 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo06g2919 341 ProSiteProfiles Zinc finger SIAH-type profile. 132 192 IPR013010 GO:0008270
Amo06g2919 341 SUPERFAMILY RING/U-box 68 121 - -
Amo06g2919 341 MobiDBLite consensus disorder prediction 15 35 - -
Amo06g2919 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 185 IPR013083 -
Amo06g2919 341 MobiDBLite consensus disorder prediction 36 60 - -
Amo06g2919 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 131 IPR013083 -
Amo06g2919 341 MobiDBLite consensus disorder prediction 1 60 - -
Amo06g2919 341 CDD RING-HC_SIAHs 77 115 - -
Amo06g2919 341 SUPERFAMILY TRAF domain-like 132 324 - -
Amo06g2919 341 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 332 - -
Amo06g2919 341 ProSiteProfiles Zinc finger RING-type profile. 79 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2919 Amo-Chr6 94994267 94998210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2919 53 327 C3H Transcription Factor Family AT2G41980 76.364 7.47e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2919 K04506 - tcc:18605771 647.506