Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2902 ATGTCACTCAAGCGAAGAAGGACCCACGCTCCCAAGCCCGCCCTAGACGACGACGTCATCTGCGAGCATTGCTCCTCCGGCGACTCCCCGGCGGAGCTTCTCCTCTGCGACAAATGCGACCGAGGCTACCACCTCTTCTGTCTCCGACCTATCCTTCCTTCCGTTCCCAAAGGCTCTTGGCTCTGCCCCTCTTGTTCCCACAGTGACACCAAGAAACCAAAATCATTTCCACTTGTTCAGACCAAAATCATTGACTTCTTTAGAATTAAACGGTCTTCGGAGGAAACCTTAACTTCAATTCAAGAGCAGATGGCATCGCTGGCTACAGCACTGATGGCAACAAAAGCGGTGTTCAGCAATGAGCTTACTTACATTCCTGGTATGGCGCCAAGATCTGCTAATTGTCCTGCTTTGGAGAGTGGTGGGATGCAGGTCTTATCAAAAGAAGACACAGACACTTTAAACTTGTGCAGAACTATGATGAAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTTGAGGCAGATAGATTCATAAGAGATTTAACCATAATCACAGAATATGTTGGAGACGTTGACTTTTTAAAGAATAGGGAAAATGATGATGGGGATAGCATGATGACACTTCTTTCTGCTTCTAATCCCTCCCAAACGCTTGTCATCTGTCCAGATAAACGAAGCAATATAGCACGCTTCATCAATGGCATAAACAACCACACACCGGAAGGGAAAAAGAAGCAGAACCTGAAGTGTGTGAGATTTGATGTCAATGGTGAATGCCGGGTTCTTTTAATTGCTAACAGAGATATATCAAAAGGGGAGAGATTGTACTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTCTAA 906 0.4514 MSLKRRRTHAPKPALDDDVICEHCSSGDSPAELLLCDKCDRGYHLFCLRPILPSVPKGSWLCPSCSHSDTKKPKSFPLVQTKIIDFFRIKRSSEETLTSIQEQMASLATALMATKAVFSNELTYIPGMAPRSANCPALESGGMQVLSKEDTDTLNLCRTMMKRGECPPLMVVFDPLEGFTVEADRFIRDLTIITEYVGDVDFLKNRENDDGDSMMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2902 301 Pfam PHD-finger 20 67 IPR019787 -
Amo06g2902 301 SMART PHD_3 20 66 IPR001965 -
Amo06g2902 301 ProSiteProfiles SET domain profile. 167 289 IPR001214 GO:0005515
Amo06g2902 301 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Amo06g2902 301 CDD SET_ATXR5_6-like 164 301 - -
Amo06g2902 301 CDD PHD_RSF1 21 65 - -
Amo06g2902 301 PANTHER HISTONE ACETYLTRANSFERASE 6 95 - -
Amo06g2902 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 81 IPR013083 -
Amo06g2902 301 SUPERFAMILY SET domain 157 289 IPR046341 -
Amo06g2902 301 PANTHER HISTONE ACETYLTRANSFERASE 100 298 - -
Amo06g2902 301 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 100 298 - -
Amo06g2902 301 Pfam SET domain 42 289 IPR001214 GO:0005515
Amo06g2902 301 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Amo06g2902 301 Gene3D SET domain 82 301 IPR046341 -
Amo06g2902 301 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 6 95 - -
Amo06g2902 301 SUPERFAMILY FYVE/PHD zinc finger 12 73 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2902 Amo-Chr6 94761507 94765985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2902 10 84 C2H2 Transcription Factor Family AT3G01460 31.579 1.70e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo06g2902 SET 3.3e-05 No_clan