Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2890 ATGAAACCACTTGAAGGGATAAGTGATGATGTCAAAGGAAGACTTGCATGCTATAAAGAAGATTGGACAAAGGGATTTAAATCTGGCTTTAGGATATTTGCTCCAACTTTCTACATATTTTTTGCTTCTGCTATCCCCGTAATTGCTTTTGGGGAACAACTTAATAAGGAAACAAATGGGAGCTTGGGGATAGTGGAATCATTAATATCTACGGGGCTTTGTGGAATTATCCACTCAATATTTGGTGGTCAGCCATTGTTGATTGTTGGTGTTGCTGAACCCACCATTATAATGTATCATATTATGTTTCAGTTTTGCGCATCAAAACCAGATTTCGGTGCCAAACTCTTTTTGCCTTGGGCTGCTTGGGTTTGTGTGTGGACAGCATTATTTCTAATTGTGCTTGCAATTTTCAATGCATGCACAGTTATCTCAAGGTTCACAAGAATTTGCGAGGAATTATTCGGAATGCTAATCACTGTCCTTTTCGTTCAACAAGCTGTAAAGGGTGTGTTGTACGAATTCCTTCCAGCTGAGGGCGGAGATGGAAACTCAGAGGATTCAAAATTCCAATGGAGATACATAAATGGCTTACTGGCTGTGATATTCTCTTTTGGGTTACTTCTGAGTGCGAAGCAAAGTAGAAAAGCAAGACATTGGCGATATGGGACAGGGTGGCTAAGAGCTTTAATAGCAGATTATGGGGTTCCATTGATGGTGGTGTTTTGGACTGCATTATCGTACACAAAACCAAGCAAAGTTCCATCTCAAGTTCCTCGCAGGTTGTTTTGTCCACTGCCCTGGCAATCTGAATCTCTCTACCACTGGACAGTAGTGAAGGACATGGGCAAGGTACCCATCTTTTATATTGTGGCGGCGGTTATACCTGCTCTCATGGTTGCTGCTTTATACTTTTTTGATCATAGTGTTGCTTCCAAGATGGCTCAGCAAAAGGAATTTAACCTTCAAAAACCTTCTGCTTACCACTATGATCTTTTCTTGCTTGGACTCATGACTCTACTTTGTGGTGTTCTTGGGCTTCCTCCATCAAATGGAGTCCTTCCTCAATCACCAATGCATACAAAGAGTCTTGCAGTTCTTAATAGGCAGATTATCCGAAAGAAGATGGAGAAGAAAGCGAAAGAAGTGCTTAAGAAACAAGGGAGCCACGCAGAATTATTCGGCAGGATGCAATCTGTGATTATAGAAATGGATGCAGATCCTACTTTTAAAGAAATGGAGAAATTGAAAAAGGCAGTGATGAAATCTGAGGATGAGAAGGAAGGTGAAAAAAATGTAGAAAGTTTTGATATGAAACAAATAGAGGAACATCTACCTGTGCGTGTTAATGAGCAAAGGCTTAGCAACTTGTTGCAGTCTCTTATGGTTGGGTTATCAGTTTTGATGATCCCCATCATAAGAAAAATACCTACATCAGTTTTGTGGGGATATTTTGCTTTCATGGCCATTGATAGTCTCCCTGGCAATCAATTCTGGGAAAGGTTCTTGCTACTCTTTATCCCAAAAAGTCGCCGCTACAAAATTTTGGAAGGTCCACATGCAAGTTTTGTGGAGCTGGTACCATTCAAGGTGACAGCATTATTCACAGGGTTGCAATTGGTGTATTTCTTGATTTGTTACGGGATGACGTGGATACCAACGGGAGGAATACTGTTCCCTTTGCCTTTCTTCCTTCTCATACTCATTAGAGAGCATCTCCTTCCTAAGTTCTTCAAAGCCCAACATCTTCATGAACTTGATGCTTCTGAGTACGAGGAAGTTGCTGGTGATCCTACTGTTTCTCAAATGATACCACTCATGATGGATAACGAGCAGGGTAACACGGATGATGAGGATGATAAGTTAGGTTTGGGTGCAGAGATATTGGATGAGATGACTACTCACAGAGGAGAGTTGAAACATAGAACTCTAACAAGATTAGATAGAGAATCCCATTCTCATTCTGAAGAACCTCCTCATCAACAATAA 1989 0.4087 MKPLEGISDDVKGRLACYKEDWTKGFKSGFRIFAPTFYIFFASAIPVIAFGEQLNKETNGSLGIVESLISTGLCGIIHSIFGGQPLLIVGVAEPTIIMYHIMFQFCASKPDFGAKLFLPWAAWVCVWTALFLIVLAIFNACTVISRFTRICEELFGMLITVLFVQQAVKGVLYEFLPAEGGDGNSEDSKFQWRYINGLLAVIFSFGLLLSAKQSRKARHWRYGTGWLRALIADYGVPLMVVFWTALSYTKPSKVPSQVPRRLFCPLPWQSESLYHWTVVKDMGKVPIFYIVAAVIPALMVAALYFFDHSVASKMAQQKEFNLQKPSAYHYDLFLLGLMTLLCGVLGLPPSNGVLPQSPMHTKSLAVLNRQIIRKKMEKKAKEVLKKQGSHAELFGRMQSVIIEMDADPTFKEMEKLKKAVMKSEDEKEGEKNVESFDMKQIEEHLPVRVNEQRLSNLLQSLMVGLSVLMIPIIRKIPTSVLWGYFAFMAIDSLPGNQFWERFLLLFIPKSRRYKILEGPHASFVELVPFKVTALFTGLQLVYFLICYGMTWIPTGGILFPLPFFLLILIREHLLPKFFKAQHLHELDASEYEEVAGDPTVSQMIPLMMDNEQGNTDDEDDKLGLGAEILDEMTTHRGELKHRTLTRLDRESHSHSEEPPHQQ* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2890 662 Pfam HCO3- transporter family 3 174 IPR011531 GO:0006820|GO:0016021
Amo06g2890 662 Pfam HCO3- transporter family 446 537 IPR011531 GO:0006820|GO:0016021
Amo06g2890 662 Pfam HCO3- transporter family 196 371 IPR011531 GO:0006820|GO:0016021
Amo06g2890 662 PANTHER ANION EXCHANGE PROTEIN 2 655 IPR003020 GO:0005452|GO:0006820|GO:0016020
Amo06g2890 662 Coils Coil 413 433 - -
Amo06g2890 662 PANTHER BORON TRANSPORTER 6-RELATED 2 655 - -
Amo06g2890 662 Gene3D Helical hairpin bin 14 56 - -
Amo06g2890 662 MobiDBLite consensus disorder prediction 635 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2890 Amo-Chr6 94468015 94471396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2890 3 657 Antiporters AT5G25430 62.935 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2890 K24194 - aip:107647497 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2890 06 94468015 94471396 Amo08g2062 08 33378161 33381898 PCT
Amo08g2062 08 33378161 33381898 Amo06g2890 06 94468015 94471396 PCT