Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2879 ATGGCTATTTTGGTGGGGACTTGTTTGTTATACCTAAGGTTAAGAATCGCAGCAGAGGCAGCCGGAGCTTTATCATATCTTCACTCAGCTGCTTCCATTCCAATTGTCCACAGAGATGTTAAGAGTGCCAACATTCTCTTAGACAAAGATTACACTGCCAAAGTCTCTGAATTTGAAGCTTCAAGATTTGAAAGATGGGTTACTGAGAAAAGCGACGTGTATAGCTTTGGCGTTGTGCTGGCAGAGCTTCTTACAGGAGAGAAAGCTCTTTCATTTGCGAGGTCGGAAGAGAAAGCAAATCTTGCTATCTACTTTCTATCTTGCCTGAAAGAGAATTGCTTGTTTGAAGCTCTTCAAGTTGGAATCTTGAATGAAGATAACAAGCAAGAGATTATAGAAGTTGCTAATATTACAGCAAAGTGTTTGAGTCTTAAAGGGGAAGAAAGACCATACATGAAGGAAGTGGCAGTGAAATTGGAAGGAATAAGGGAAATGTCACAGCAACAATGGGTCAATAATGCCGACAACAATTTTGAAGAGACCCAATCGCCAGAAAGACATGATAGTATTGCCAATGATGAAGAAGCCTTATTGTCTTTAGCATATGGAAGGTGA 615 0.4033 MAILVGTCLLYLRLRIAAEAAGALSYLHSAASIPIVHRDVKSANILLDKDYTAKVSEFEASRFERWVTEKSDVYSFGVVLAELLTGEKALSFARSEEKANLAIYFLSCLKENCLFEALQVGILNEDNKQEIIEVANITAKCLSLKGEERPYMKEVAVKLEGIREMSQQQWVNNADNNFEETQSPERHDSIANDEEALLSLAYGR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2879 204 SUPERFAMILY Protein kinase-like (PK-like) 11 167 IPR011009 -
Amo06g2879 204 Pfam Protein kinase domain 16 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2879 204 Pfam Protein tyrosine and serine/threonine kinase 64 158 IPR001245 GO:0004672|GO:0006468
Amo06g2879 204 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2879 204 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 62 IPR045274 GO:0007166
Amo06g2879 204 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 67 181 IPR045274 GO:0007166
Amo06g2879 204 ProSitePatterns Serine/Threonine protein kinases active-site signature. 35 47 IPR008271 GO:0004672|GO:0006468
Amo06g2879 204 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 9 67 181 - -
Amo06g2879 204 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 9 13 62 - -
Amo06g2879 204 Gene3D Transferase(Phosphotransferase) domain 1 66 188 - -
Amo06g2879 204 Gene3D Transferase(Phosphotransferase) domain 1 6 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2879 Amo-Chr6 94341549 94342203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2879 13 204 Receptor kinase-like Gene Family AT1G21240 46.522 2.57e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo06g2879 PK_Tyr_Ser-Thr 1.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2879 - - ahf:112757813 305.449