Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2878 ATGACGTTGAAGGCCACAGTAGTACTACTCTTAATAGTTGTTGCACTAGTCCTTCTAGCAACAATTGCAGCAGATGATGGAAATAATCAAACCCTTGAAGGATGCAGAAGCGACTGTGGTGGTGTCCGAGTTCCATATCCATTTGGCATAGGGAACTCATCATCCGTCCCCCATAAAAGCTGTTTCTTGCAAAGTTCGTTTGAGCTGACATGCCCAAATTCAACTTTATACTGGGGAAATATCAAAGTCTTAGACATAAAAATTTCCCAGGCTAAAGTTGACATGTCGATTCCTATCTCAAGGATTTGTCGTGACGGTCATTATTATAGAGGAGTTTCCATAGATATTCCTTCTTTCACCATTTCTAGTGAAGACAACAAGTTCGTTAGTGTAGGTTGCGACACCTATGGCTATCTTCACAGCTCCTACAAAGACGACGATAATGCAACATATTCAACAGGGTGCATAACAAGATGTTATGGCAGTTCTATGGAAGTTGAGGATGGACATTGTTCTGGGATTGGGTGTTGTCAGGTGGATATTCCGCCTAAAATGAGGATGACCTTTGTCAAGTCATTTTCCTTTTACAATTTCAGCCAAACTTGGAGATTCAACAACTGCAGCTATTCTTTTGTTGTCAAAAAAGAAAACTACACATTTTACAGGGAACACTTGAGAAACCTGCCTTTTGAGGAATTCCCTGTGGTGTTTGATTGGAGTGTTGGAGATGAAACACGTGAAGCTTCTCGGAAAAGAGGTACCAGTTACGCTTGCAAGGGAAACACCACTCGTAATGACTCTGTCCCTACTGGATATGGTTACATATGCCAATGCAATAAAGGTTTTGAAGGAAATCCTTACCACCCTCTTGGCTGCATAGACATTGATGAATGCAAGACAGGACAACATTCATGTGTAAGTGACCATAATTGTCACAATACAAATGGATTCTACACATGCTTCTGTCCTAAGGGGCAATCTGGAAATGGTACCAAGGAAGATGGTTGCCACAAGAAAAATTTCCTTCCACATATTGTCATTGGTACAAGTGCAGGATTCATAGCTATTTTCGTAGGGACTTGTTTGCTATACTTAGCGCACCAAAAGAAAAAACTCATCAAACTGAAGGAAAAGTTTTTTGAGCAAAACGGCGGTCATATTTTAGTACAACAAGGAGAAGAGTCATCCCATGTTAAAATTTTCACTGCTGACAAATTAAAGAAAGCCACTAACAACTATGACGAGAAGTTAATCATTGGCAGGGGAGGTTATGGCACGGTTTTCAAAGGAGTTCTAGAGAATAACACAATTGTTGCTATCAAGAAGTCCAAAATAGTTGATCCTGGCCAAGTTATGCAATTCATCAATGAGGTGATTGTTGTCTCTAAAATTAACCACAGAAATGTGGTGAAGCTTTTGGGTTGTTGTTTAGAAACAGAAGTTCCTCTACTAGTCTATGAGTTTGTAAGCAATGGTACACTCTTTGATTTCATCCATAATGAAAAGAAGAGAAATCATTTTAACTGGAAAAATCGTCTCAGAATTGCAGCAGAGGCGGCTGGAGCTTTATCATATCTTCACTCATCTGCTTCCATTCCAATTGTCCACAGAGATGTTAAAAGTGCTAATATTCTCTTAGACGAAGACTACACTGCTAAAGTCTCTGACTTTGGAACTTCTAGATTTGTTCCATTGGATCAAACTGCACTAGCTACAATGGTGCAAGGAACTTTTGGTTACTTGGATCCAGAGTACATGCAAACTAGCCAATTAACTGAGAAAAGCGATGTGTATAGTTTTGGTGTTGTGCTGGCTGAGCTTCTTACAGGAAAGAAACCTCTTTTGTTGGGGAAGTCGAAAGAGAAAACAAATATTTCTATCTACTTTCTATCTTGCCTAGAAGAGAATTGCTTGTTTGAAACTCTTCAAGATGGAATCTTGAATGAAGAAAACAAGCAAGAGATTGTGGAAGTTGCTAATATTACAGCAAAGTGTTTGAGACTTAAAGGAGAAGAAAGACCAAGCATGAAGGAAGTGGCAATGGAATTGGAGGGAATAAGGAGAATGTCAAAGCATCAGTGGGTTAACAATGGAGACAAAAATTTTGAAGAGACGCAGCACTTACTTCCTATATCATCATCGTCGAAAGGATATGAGTATGGTGATAGCAGTAGTAGTAGTAGTCATCAAAATATAAATTATGATAGTATCATCAGGGATCAAGAAGGGGTAATTGCTTTAGCAGATGGAAGTTGTGGAGGGAATGGGAGTGAAGGGCATGTTGTTATTTATTATTGTGGATATGGTTACCAGTGTCAATGCAACCAAGGTTTTGAAGGAAATCCATATCTTCATGCTTGCACAGACACTAATGAATGTGATATGGGAAATCATACATGTCTAATGAACAATAATTGTCCTAACACAATTGGATCCTACCAGTGCTTTTGTCCCAAGGGACAATCAGAAAATGGTACCAAAACGGTTGCCACAAGAAAAATTTGCTTCCACCATCAGATAAGATAA 2526 0.3911 MTLKATVVLLLIVVALVLLATIAADDGNNQTLEGCRSDCGGVRVPYPFGIGNSSSVPHKSCFLQSSFELTCPNSTLYWGNIKVLDIKISQAKVDMSIPISRICRDGHYYRGVSIDIPSFTISSEDNKFVSVGCDTYGYLHSSYKDDDNATYSTGCITRCYGSSMEVEDGHCSGIGCCQVDIPPKMRMTFVKSFSFYNFSQTWRFNNCSYSFVVKKENYTFYREHLRNLPFEEFPVVFDWSVGDETREASRKRGTSYACKGNTTRNDSVPTGYGYICQCNKGFEGNPYHPLGCIDIDECKTGQHSCVSDHNCHNTNGFYTCFCPKGQSGNGTKEDGCHKKNFLPHIVIGTSAGFIAIFVGTCLLYLAHQKKKLIKLKEKFFEQNGGHILVQQGEESSHVKIFTADKLKKATNNYDEKLIIGRGGYGTVFKGVLENNTIVAIKKSKIVDPGQVMQFINEVIVVSKINHRNVVKLLGCCLETEVPLLVYEFVSNGTLFDFIHNEKKRNHFNWKNRLRIAAEAAGALSYLHSSASIPIVHRDVKSANILLDEDYTAKVSDFGTSRFVPLDQTALATMVQGTFGYLDPEYMQTSQLTEKSDVYSFGVVLAELLTGKKPLLLGKSKEKTNISIYFLSCLEENCLFETLQDGILNEENKQEIVEVANITAKCLRLKGEERPSMKEVAMELEGIRRMSKHQWVNNGDKNFEETQHLLPISSSSKGYEYGDSSSSSSHQNINYDSIIRDQEGVIALADGSCGGNGSEGHVVIYYCGYGYQCQCNQGFEGNPYLHACTDTNECDMGNHTCLMNNNCPNTIGSYQCFCPKGQSENGTKTVATRKICFHHQIR* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2878 841 Gene3D Transferase(Phosphotransferase) domain 1 489 710 - -
Amo06g2878 841 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Amo06g2878 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Amo06g2878 841 ProSiteProfiles EGF-like domain profile. 294 337 IPR000742 -
Amo06g2878 841 SMART egfca_6 789 836 IPR001881 GO:0005509
Amo06g2878 841 SMART egfca_6 294 337 IPR001881 GO:0005509
Amo06g2878 841 ProSitePatterns Calcium-binding EGF-like domain signature. 789 815 IPR018097 GO:0005509
Amo06g2878 841 CDD STKc_IRAK 419 686 - -
Amo06g2878 841 SUPERFAMILY Growth factor receptor domain 270 331 IPR009030 -
Amo06g2878 841 Gene3D Laminin 250 336 - -
Amo06g2878 841 Gene3D Laminin 753 829 - -
Amo06g2878 841 Pfam Wall-associated receptor kinase galacturonan-binding 35 92 IPR025287 GO:0030247
Amo06g2878 841 Pfam Protein kinase domain 414 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2878 841 SMART serkin_6 413 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2878 841 Pfam Calcium-binding EGF domain 789 824 IPR001881 GO:0005509
Amo06g2878 841 Pfam Calcium-binding EGF domain 294 336 IPR001881 GO:0005509
Amo06g2878 841 SUPERFAMILY EGF/Laminin 787 826 - -
Amo06g2878 841 ProSiteProfiles Protein kinase domain profile. 413 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2878 841 ProSitePatterns Calcium-binding EGF-like domain signature. 294 320 IPR018097 GO:0005509
Amo06g2878 841 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 712 IPR045274 GO:0007166
Amo06g2878 841 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 767 828 IPR045274 GO:0007166
Amo06g2878 841 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Amo06g2878 841 SUPERFAMILY Protein kinase-like (PK-like) 399 706 IPR011009 -
Amo06g2878 841 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 806 817 IPR000152 -
Amo06g2878 841 Gene3D Phosphorylase Kinase; domain 1 387 488 - -
Amo06g2878 841 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 712 - -
Amo06g2878 841 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 767 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2878 Amo-Chr6 94330158 94341480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2878 767 826 Receptor kinase-like Gene Family AT1G21230 50.820 7.78e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo06g2878 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2878 - - adu:107495457 872.463