Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2850 ATGTTACCTGTGGTTTTTTATTGGAGTGTTGGAAACAAGACGTGTAAAGAATCTTTGAGCAGAGGTACCAACGCTTGCAAGGGAAATAGTACTTGTGTGGAGACAGAGAGTGGATATGGTTACCGGTGTCAATGCAACCAAGGTTTTGAAGGAAATCCATACCTTCATGCTTGCACAGACATTAATGAATGTGATAGGCAGATTCATACATGTCTAATTCTTGTACAAGCAGTAGTAGCTAGTAATCAAATATCTCTTAGTAGATTCCAAAGTGAGTGTTATGGTATTCAAATTCCATATCCATTTGGCATAGAAAATTCATCTACCGGTGCTACCTATTTCTTAGAAGAATCCTTTGAACTTACTTGCAACAGTACTATTTCCAATTTAATATGGGACAATAAGTCAGTCATAGCCATAAACGTCTCCCAAGGTCAAATAGATATATTGATTTCTGCCATCCAAATTTGTTATGATAGTCGCCTCGGTAATCCCGTTGGTCTTACCCCTCCCTTCGGAATCACAAATAGTCTTTTTTTCATCATTTCAAACAAAGACATCAAGTACATAGTTGTTGGCTACAGTACTTTCAGCTATCTTACAATCTTCAGCAACACCAGCGGTTCTATAGTGGTGTGCGTAACTCAATGTCATAATATCATGAGTATGGATGAGGGACATTGTTCCGGCAATGGGTGCTGTATGGTGGATATTCCTACCGGAATGACAATGGTCACAATTCAAGTAGCAACCTATCTCTACTGTAGCTATTCCTTTGTCGTCAAGAATGGTTACTACTCGTTTTCGAAGGACCACTTGGAGAATCTACCATATCAGATATTACCTGTGGTTTTTGATTGGAGTGTTGGAAACAAGACGTGTAAAGAATCTTTGAGCAGAGGTACCAACGCTTGCAAGGGAAATAGTACTTGTGTGGAGGCAGAGAGCGGATATGGTTACCGGTGTCAATGCAACCAAGGTTTTGAAGGAAATCCATACCTTCATGCTTGCACAGACATTAATGAATGTGATAGGCATATTCATATATGTCTAAGTAGGGATAACTGTCTCAATTCAATTGGATCATATTCATGCTTTTGTCCTAACGGACAATTAGGAAATGGATCAGTTATAGGAGGTTGCCATGAGAAAATTCACAGAAATATGCTTCCAAAAATTGTCACTGGTGCAAGATTCATAGCTGTTTTCGTGGGAACTTGTTTGTTATACCTCAGATACCAAAAGAGAAAACTCACCAAACTAAAGAGAAAAGAGTCCTCTCGTACAACTAAAATTTTTACTGCCGAACAGTTGAAGAAGGCCACCAACAACTACGATGACAACTTAGTTGTTGGCAGGGGAGGTTTTGGCACAGTATACAAAGAACTTCTAGAGAATGACAAAGATGTTGCCATCAAGAAGTCCAAAACAGTTAATCCTAAACAAGTTGAGCAATTCATCAATGAGGTTATTATTTTGTCTCAAATTAACCGTAGAAATATTGTGAAGCTTTTGGGTTGCTGTTTAGAAACAGAAGTCCCTCTTCTTGTCTATGAATTTGTAAGCAATGGCATAGTCTTCGATTTTATCCGTAATGAAAACAAGAGAAATAATTTCAATTGGAAAAATCGTCTCAAAGTTGCAGCAGAGGCAGCCGGAGCTTTATCGTATCTTCACTCAGCTGCTTCCATACCAATTGTCCACAGAGATGTTAAGAGTGCCAACATTTTCTTAGATGCCAAAGTCTCTGACTTTGGAACTTCAAGATTCATTCCACTGGATCAAGTTGCATTGGCTACAATGGTGCAAGGAACTTTTGGTTATTTGGATCCAGAATTCATGCAAACCAGCCAACTCACTGAGAAAAACGATGTGTATAGCTTTGGCGTTGTGCTGGCAGAGCTTCTTACAGGACAGAAAGCTCTTTCATTTGAGAGGCCGGAAGGGAAGGAAAATCTTGCTATCTACTTTCCTTGCCTGAAGGAGAATCGCTTGTTTGAAGCTCTTCAAGTTGGAATCTTGAATGAAGATAACAAGCAGCAGATTGTGGAAGTTGCTAATGTTACTGCAAAGTGTTTGAAACTCAAAGGGGAAGAGAGACCATACATGAAGGAAACATTAATGAATGTGATGTGGGAAATCATACATAGAAAACTCACCAAACTAAAAGAGAAATTCTTTAAGCAAAACGGTGGTCTTATTTTGCCACAACAACTCTCTACAAAAGAAGAGTCCTCTCATACTACTAAAATTTTTACTGCCGAACAGTTGAAGAAGGCCACCAACAACTACGACGACAACCTAGTCGTTGGCAGGGGAGGTTTTGGCGCAGTGTACAAAGGACTTCTAGAGAATGACAAAGTTGTTGCCATCAAGAAGTCCAAAACAGTTAATCCTACACAAGTTGAGCAATTCATCAATGAGGTTATTGTTTTGTCCCAAATTAACCACAGAAATGTGGTGAAGCTTTTGGGTTACTGTTTAGAAACAGAAGTCCCTCTTCTTGTCTATGAGTTTGTAAGCAATGGCACACTCTTCGATTTTATCCATAATGAAAACAAGAGAAATAATTTCAATTGGGAAAATCGTCTGAGAGTTGCAGCAGAGGCAGCCGGAGCTTTATCATATCATCACTCAGCTGCTTCCATACCAATTGTCCACGGAGATGTTAAGAGTGTCAACATTCTCTTAGACGAAGATTTCACTGCCAAAGTCTCTGACTTTGGAACTTCTAGATTCATTCCACGGGATCAAGTTGCATTGGCTACAATGGTCCAAGGAACTTTTGGTTATTTGGATCCAGAATACATGCAAACCAGCCAACTCACCGAGAAAAGCGATGTGTATAGCTTTGGCGTTGTGCTGGCAGAGCTTCTTACAGGACAGAAAGCTCTTTCATTTGAGAGGCCGGAAGGGAAGGAAAATCTTGCTATCTACTTTCTATCTTGCCTGAAGGAGAATCGCTTGTTTGAAGCTCTTCAAGTTGGAATCTTGAATGAAGATAACAAGCAGCAGATTGTGGAAGTTGCTGATGTTACTGCAAAGTGTTTGAGACTCAAAGGGGAAGAGAGACCATACATGAAGGAAGTGGCAGTGAAATTGGAAGGAATAAGGGAAATGTCACAGCAACAATGGGTCAATAATGCGGACAACAATTTTGAAGAGACCCAATCTCCAAAAAGACATGATAGTATTACCAATGATGAAGAAGTCTTATTGTCTTTATCATATGAAAGGTGA 3240 0.396 MLPVVFYWSVGNKTCKESLSRGTNACKGNSTCVETESGYGYRCQCNQGFEGNPYLHACTDINECDRQIHTCLILVQAVVASNQISLSRFQSECYGIQIPYPFGIENSSTGATYFLEESFELTCNSTISNLIWDNKSVIAINVSQGQIDILISAIQICYDSRLGNPVGLTPPFGITNSLFFIISNKDIKYIVVGYSTFSYLTIFSNTSGSIVVCVTQCHNIMSMDEGHCSGNGCCMVDIPTGMTMVTIQVATYLYCSYSFVVKNGYYSFSKDHLENLPYQILPVVFDWSVGNKTCKESLSRGTNACKGNSTCVEAESGYGYRCQCNQGFEGNPYLHACTDINECDRHIHICLSRDNCLNSIGSYSCFCPNGQLGNGSVIGGCHEKIHRNMLPKIVTGARFIAVFVGTCLLYLRYQKRKLTKLKRKESSRTTKIFTAEQLKKATNNYDDNLVVGRGGFGTVYKELLENDKDVAIKKSKTVNPKQVEQFINEVIILSQINRRNIVKLLGCCLETEVPLLVYEFVSNGIVFDFIRNENKRNNFNWKNRLKVAAEAAGALSYLHSAASIPIVHRDVKSANIFLDAKVSDFGTSRFIPLDQVALATMVQGTFGYLDPEFMQTSQLTEKNDVYSFGVVLAELLTGQKALSFERPEGKENLAIYFPCLKENRLFEALQVGILNEDNKQQIVEVANVTAKCLKLKGEERPYMKETLMNVMWEIIHRKLTKLKEKFFKQNGGLILPQQLSTKEESSHTTKIFTAEQLKKATNNYDDNLVVGRGGFGAVYKGLLENDKVVAIKKSKTVNPTQVEQFINEVIVLSQINHRNVVKLLGYCLETEVPLLVYEFVSNGTLFDFIHNENKRNNFNWENRLRVAAEAAGALSYHHSAASIPIVHGDVKSVNILLDEDFTAKVSDFGTSRFIPRDQVALATMVQGTFGYLDPEYMQTSQLTEKSDVYSFGVVLAELLTGQKALSFERPEGKENLAIYFLSCLKENRLFEALQVGILNEDNKQQIVEVADVTAKCLRLKGEERPYMKEVAVKLEGIREMSQQQWVNNADNNFEETQSPKRHDSITNDEEVLLSLSYER* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2850 1079 ProSiteProfiles EGF-like domain profile. 339 377 IPR000742 -
Amo06g2850 1079 Gene3D Laminin 341 377 - -
Amo06g2850 1079 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 356 367 IPR000152 -
Amo06g2850 1079 ProSiteProfiles EGF-like domain profile. 17 59 IPR000742 -
Amo06g2850 1079 Gene3D Phosphorylase Kinase; domain 1 419 520 - -
Amo06g2850 1079 Gene3D Phosphorylase Kinase; domain 1 738 839 - -
Amo06g2850 1079 Pfam Protein kinase domain 448 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2850 1079 SMART serkin_6 445 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2850 1079 SMART serkin_6 764 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 76 709 - -
Amo06g2850 1079 Pfam Calcium-binding EGF domain 339 371 IPR001881 GO:0005509
Amo06g2850 1079 ProSiteProfiles EGF-like domain profile. 296 338 IPR000742 -
Amo06g2850 1079 ProSitePatterns EGF-like domain signature 2. 322 337 IPR000742 -
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 711 1058 - -
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 711 1058 IPR045274 GO:0007166
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 76 709 IPR045274 GO:0007166
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 74 IPR045274 GO:0007166
Amo06g2850 1079 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 1 74 - -
Amo06g2850 1079 ProSiteProfiles Protein kinase domain profile. 445 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2850 1079 ProSitePatterns EGF-like domain signature 2. 43 58 IPR000742 -
Amo06g2850 1079 SUPERFAMILY Protein kinase-like (PK-like) 424 708 IPR011009 -
Amo06g2850 1079 ProSiteProfiles Protein kinase domain profile. 764 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2850 1079 Pfam Protein tyrosine and serine/threonine kinase 770 1033 IPR001245 GO:0004672|GO:0006468
Amo06g2850 1079 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Amo06g2850 1079 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Amo06g2850 1079 CDD EGF_CA 24 51 - -
Amo06g2850 1079 CDD STKc_IRAK 770 1037 - -
Amo06g2850 1079 ProSitePatterns Protein kinases ATP-binding region signature. 770 793 IPR017441 GO:0005524
Amo06g2850 1079 Gene3D Laminin 13 65 - -
Amo06g2850 1079 Gene3D Laminin 292 340 - -
Amo06g2850 1079 ProSitePatterns Calcium-binding EGF-like domain signature. 339 365 IPR018097 GO:0005509
Amo06g2850 1079 CDD EGF_CA 339 370 - -
Amo06g2850 1079 SMART egfca_6 339 382 IPR001881 GO:0005509
Amo06g2850 1079 SUPERFAMILY Protein kinase-like (PK-like) 743 1034 IPR011009 -
Amo06g2850 1079 SUPERFAMILY EGF/Laminin 339 374 - -
Amo06g2850 1079 Gene3D Transferase(Phosphotransferase) domain 1 840 1062 - -
Amo06g2850 1079 Gene3D Transferase(Phosphotransferase) domain 1 521 728 - -
Amo06g2850 1079 SMART egf_5 342 382 IPR000742 -
Amo06g2850 1079 SMART egf_5 14 59 IPR000742 -
Amo06g2850 1079 SMART egf_5 293 338 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2850 Amo-Chr6 93889597 93904125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2850 90 748 Receptor kinase-like Gene Family AT1G21250 41.286 6.26e-160 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo06g2850 PK_Tyr_Ser-Thr 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2850 - - ahf:112757813 707.597