Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2826 ATGAAGCTTCTTACAATAATGCTTCTCATGTTCTTCCTTATTCTCCACAAACCAAGTTTCGTTCTTTCTTCAACAATTGATTACCCTTTTGCTCCTTCACCTCAAATTCAAGTCATTTCTACATCAATGGCTTCTTCACCTTCATCCCCTGGTTTTGAACAAGAGAATGAAAAGCAGGGCATGGATTCACACAGGAAAATGGTGATAGCTTTTGTTGTTGCCAGCACTGCACTTAGTGCACTCATTTTATGCCTCTTATTCTTCTGGATTTATTATCATACAAGCCATTCATCAAAATCCAAAAGGACAAGTGTTCAAAACTCAGGGCAAGATGCTGAGAAAGGGGCATATTTGAGCAAATTTAGTTCTATAAAGATGGTGGGTAAGAAGGGTTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAGGGCACAAATAATTTCAAGGAGAGTAATATTTTGGGGGAGGGTGGTTTTGGATGTGTTTATAAGGCTACTTTGGATGATAATTTGGATGTTGCTGTTAAAAAACTTCACTGTGAAAATCAATATGCTGAGACAGAATTTGAGAATGAGGTGGAATTGTTAAGTAAAATTCAGCATCCCAACATAATTTCTTTATTGGGTTGTAGCAATGATGGAATTACAAAGTTTATTGTCTATGAATTGATGCACAATGGATCATTGGAAACCCAATTACATGGTGAAACACCTTATCTTAATTTTATTTTAATAGGATTAAAATATCTGCATGAGCACTGTTACCCTGCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCAAAGGTAAACAAGACAAATACCATCAATATTATGTTATTGCATTTACTAAAATTTAATTTTACTTTTGTTGCTGCCGTGGCTGTGTTGTGTGTGCAACCGGAGCCGAGTTACCGGCCGCTGATTGCGGATGTTCTGCACTCACTTATTCCTCTTGTGCCTGTTGAGCTTGGAGGAACACTCAGAGTTTCACAAGTGACACAACAAGTTTTACCAATTGATGATGTTGCTGAGAATTCTAGTCACTCAATTTGA 1080 0.3648 MKLLTIMLLMFFLILHKPSFVLSSTIDYPFAPSPQIQVISTSMASSPSSPGFEQENEKQGMDSHRKMVIAFVVASTALSALILCLLFFWIYYHTSHSSKSKRTSVQNSGQDAEKGAYLSKFSSIKMVGKKGCVPIIDYKQIEKGTNNFKESNILGEGGFGCVYKATLDDNLDVAVKKLHCENQYAETEFENEVELLSKIQHPNIISLLGCSNDGITKFIVYELMHNGSLETQLHGETPYLNFILIGLKYLHEHCYPAVIHRDLKSSNILLDANFNAKVNKTNTINIMLLHLLKFNFTFVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLRVSQVTQQVLPIDDVAENSSHSI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2826 359 ProSiteProfiles Protein kinase domain profile. 148 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2826 359 PANTHER OS01G0750732 PROTEIN 7 280 - -
Amo06g2826 359 Pfam Protein kinase domain 149 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2826 359 Gene3D Transferase(Phosphotransferase) domain 1 224 287 - -
Amo06g2826 359 PANTHER BNAC02G46490D PROTEIN 7 280 - -
Amo06g2826 359 Gene3D Phosphorylase Kinase; domain 1 108 223 - -
Amo06g2826 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Amo06g2826 359 SUPERFAMILY Protein kinase-like (PK-like) 129 278 IPR011009 -
Amo06g2826 359 PANTHER OS01G0750732 PROTEIN 298 342 - -
Amo06g2826 359 PANTHER BNAC02G46490D PROTEIN 298 342 - -
Amo06g2826 359 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Amo06g2826 359 SMART serkin_6 148 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2826 Amo-Chr6 93499379 93502803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2826 3 279 Receptor kinase-like Gene Family AT1G80640 38.699 4.89e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Amo06g2826 Pkinase 8.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2826 - - gmx:100785380 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3689 16 147903293 147909295 Amo06g2826 06 93499379 93502803 hybridization
Amo06g2826 06 93499379 93502803 Amo10g2174 10 76581685 76585259 PCT
Amo06g2826 06 93499379 93502803 Amo20g2639 20 122675548 122679141 PCT
Amo10g2174 10 76581685 76585259 Amo06g2826 06 93499379 93502803 PCT
Amo20g2639 20 122675548 122679141 Amo06g2826 06 93499379 93502803 PCT