Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2822 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAYACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACCAATTTCCCTTTCAATCCTAACACTACCAACAACAATGTCTCTCAATCTTCTTCTTCAAAGCTTCTCTCACCAACTTTGACCGCAAAATTGCACAGATGCTACATGGCTTCTTTGCAATTAACTCGCCAACAAGATCCTCAAAATCATAATAATAATAATAGCACTAATAGTAACTACTCCAAAGTGCAAATTAGTGAAAAGGGTGATTCAATTGTGTCATCAAAAAAGAGAACACATGATGAGGAGGAGGAAGAGGTGAAACAAGATTCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAACATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTGTTTTTCCACACCAAGATATTTAA 609 0.4039 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFDTAEDAARAYDEAARLMCGARARTNFPFNPNTTNNNVSQSSSSKLLSPTLTAKLHRCYMASLQLTRQQDPQNHNNNNSTNSNYSKVQISEKGDSIVSSKKRTHDEEEEEVKQDSEANWVVKKVKGMDQIGPQFKPLEEHHIDQMIEELLHYGSIELCSVFPHQDI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2822 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 196 - -
Amo06g2822 202 MobiDBLite consensus disorder prediction 131 151 - -
Amo06g2822 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 CDD AP2 6 60 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Amo06g2822 202 MobiDBLite consensus disorder prediction 103 130 - -
Amo06g2822 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Amo06g2822 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Amo06g2822 202 MobiDBLite consensus disorder prediction 103 151 - -
Amo06g2822 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2822 Amo-Chr6 93464158 93465293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2822 1 202 AP2-EREBP Transcription Factor Family AT5G25190 57.921 1.66e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo06g2822 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2822 - - aip:107605402 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2822 06 93464158 93465293 Amo10g2179 10 76635894 76636486 PCT
Amo06g2822 06 93464158 93465293 Amo20g2642 20 122740447 122741498 PCT
Amo10g2179 10 76635894 76636486 Amo06g2822 06 93464158 93465293 PCT
Amo20g2642 20 122740447 122741498 Amo06g2822 06 93464158 93465293 PCT