Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2817 ATGGAAACACTACTTCCTACCAACAAGAAACACTTCTTCTCTACTCCTCCAACTCCATGTACACCACAACACAAGAATCAACAATCTTTGCAAGACGAAGAAGCAGAAGAAAACGATACAAACATAGGTAATAACAATAATGCTTTGTTATTATTGGATTTGAATGTCTCCGGCAACCAAGACGATCTGGACGACGGATCGCCCGAGCTCAACCTCATAACTTGTTTGGATATGGATTCATTATCCAATAACAAAAATAATTCTCCATCAGAAGAAGAACCGTCATTATTACCAGACAAACCGAATTGCTTTGGTGACGGTTCATCTTCTTCCGACGTAGAAATGAGGGTTTTTTCTTGCAATTATTGCCAGAGAAAATTTTACAGTTCGCAAGCACTTGGCGGACACCAAAACGCTCACAAAAGGGAGCGATCGATAGCCAAGAGAGGCCACAGATTCGGGACGCAAATACTGTCCTCTACACCTGCCTTTGGAATGATTCCACTTCGCTATGCTGCCTCCGCCGCCAGCATAGCGTCTCTGCCGCTCCACGGCGGCGCGTGTGGCAACAGAGGACTCGGAATTCAAGCTCATGCAATGATCCACAAACCTTCACACAATGGACACCATCACGGTTGGTCAAGACCCCTTATTGATCCACAACCCGGTGTTGCAAGACTGGCTATGGCGGATTTTCATCGAACTTCGGCATTATCGGCGTCAAGAGGAAGCGTCGGAAGATTTGAAGTGATGAATTCAGCATCGCCAAATAAAGAAATCAGTGGGTTTTTTCTTAGTAGTGGAACTCATCGTCATCATCAAGATGAAATCAAGCACCTTGATTTGTCTCTCAAGCTTTAA 861 0.446 METLLPTNKKHFFSTPPTPCTPQHKNQQSLQDEEAEENDTNIGNNNNALLLLDLNVSGNQDDLDDGSPELNLITCLDMDSLSNNKNNSPSEEEPSLLPDKPNCFGDGSSSSDVEMRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQILSSTPAFGMIPLRYAASAASIASLPLHGGACGNRGLGIQAHAMIHKPSHNGHHHGWSRPLIDPQPGVARLAMADFHRTSALSASRGSVGRFEVMNSASPNKEISGFFLSSGTHRHHQDEIKHLDLSLKL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2817 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 286 IPR044246 GO:0009788
Amo06g2817 286 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 286 - -
Amo06g2817 286 Gene3D Classic Zinc Finger 106 163 - -
Amo06g2817 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Amo06g2817 286 MobiDBLite consensus disorder prediction 1 28 - -
Amo06g2817 286 MobiDBLite consensus disorder prediction 1 44 - -
Amo06g2817 286 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Amo06g2817 286 SUPERFAMILY beta-beta-alpha zinc fingers 116 145 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2817 Amo-Chr6 93397475 93398344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2817 35 286 C2H2 Transcription Factor Family AT5G10970 35.688 2.76e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g2817 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2817 - - gmx:100809569 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2817 06 93397475 93398344 Amo10g2195 10 76889928 76891097 PCT
Amo06g2817 06 93397475 93398344 Amo20g2653 20 123027592 123028839 PCT
Amo10g2195 10 76889928 76891097 Amo06g2817 06 93397475 93398344 PCT
Amo20g2653 20 123027592 123028839 Amo06g2817 06 93397475 93398344 PCT