Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2815 ATGGAGAAAACCAATAATTTAATCGCCAATATATTGAAGAAGCAACCTTGCTTGGCATCTCAATGTGAAGCTGAAAACCTGGAGAATTTTGATAGAGATGGGTTGACCTATTTTAGAGATTTGATGGAGGAGTCATCTCTTCCTTCCAGTTTAAATATCTTGGAGAAAGATTATGATGACATGATTCGCAACAAGGGTGAATTAGATGAAAGGCTGTTCATCAATGAAGATGACAGCTTGTTAGCTTCTGGAAGTTTGTCTGGGGGTTCTGTTTCTGCAAGTGGTGTAAAGCGGAAATTTGATACAATGGCATCACCCGTAAAGACTATTACAAGTCCACTCTCGCCCCACCGCTCCCCCTCATCTCATGCTAATGGCATTCCAGGCAGTGTAAATTCAAAGATGGCAGCGACTCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGTAGTCTCATATCACCACTTGCATCAAAGCCATCACAAGAGCTTGAGCGTTTCTTGACATCATGTGACAGGGATGTCACAGGTGATGTGGTGCGCAGGGCACAGATCATATTGCAGGCAATATTTCCCAGCAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCGAGCCTGATGGACAATATTTGGGCAGAGCAACGTAGATTGGAGGCCTTGAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAATCCCAAATACTACATGCAACTAATTTAACATCACTACTAACTAATGAGAGGTTCCATCGGTGTATGCTTGCCTGTTCTGCGGAACTTGTTCTGGCAACTCATAAGACTGTAACAATGCTGTTCCCTGCAGTATTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTAAGACGACATTTGAATTCCTTGGAAGAACGACTCTTGGAGAGTATGGTATGGGAAAAGGGTTCATCGATGTATAACTCTTTAGCTGTCGCTAAACCTTCACTTGCTGCGGAAATAAATCGTCTCGGACTATCAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAATTTCTCTTGTGGAGGTTTGCCTCCTGTGCCTTCCTTGCCTAAGTTCGAGACGTCACCAACTCAGAATGGGGATACAATGTCACCAAAACGACTCTGTACAGAGTATCGAAATTCTTTTGCTTCACCAGTGAAAGATCGCCTTCTTCCCTTCAGCAATCTTAAATCAAAGCTACCCCCACCTCCTCTACAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATTAATATATTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGTTACAGTTATCACAACAGATAAGGGAGAATGTATACTGTCTTTTCCAGCAAATCCTTAATCAACGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTTTATGGAGTTGCTAAGATTTCTCAACTGAATCTAACTTTCAAGGAGATCATATACAACTATAGAAAGCAACCACAGTGCAAACCACAAGTCTTTCGCAATGTATTTGTGGATTGGTCATTGACACGCCGAAATGGGAGAAGAGGACAGGAGCATGTGGATATCATTGCATTCTACAATGAAGTATTCATTCCCACTGTGAAACCACTTCTAGTAGAACTTGGGCCTGCAGAAATCACTACAAAAAACAGCCGGATGCCTGAAGTGAATGTTAAAAATGATGCTCAATGTCCTGGATCTCCTAAAATATCATCTTTCCCAAGTCTTCCAGATATGTCACCAAAAAAGGTGTCTGCCACACGCAATGTATATGTCTCTCCACTACGATCATCCAAGATGGATGCTCTAATATCACATAACTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATAATCGTTTGAATGGCAACCGGAAGGTCAGAGGTTCGCTCAATTTTGATGACATGGATGTCGGCTTGGTTAGCGACTCAATGGTTGCGAACAGCCTCTATCTGCAAAATGGAAGTTGTGCATCGTCGTCGGGTGCACCCATGAAGTCCGAGCAACCTGACTCTTAA 2211 0.4274 MEKTNNLIANILKKQPCLASQCEAENLENFDRDGLTYFRDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDSLLASGSLSGGSVSASGVKRKFDTMASPVKTITSPLSPHRSPSSHANGIPGSVNSKMAATPVSTAMTTAKWLRSLISPLASKPSQELERFLTSCDRDVTGDVVRRAQIILQAIFPSSPLGERCVTGSLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVAKPSLAAEINRLGLSAEPMPSLDEIAMHINFSCGGLPPVPSLPKFETSPTQNGDTMSPKRLCTEYRNSFASPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIIYNYRKQPQCKPQVFRNVFVDWSLTRRNGRRGQEHVDIIAFYNEVFIPTVKPLLVELGPAEITTKNSRMPEVNVKNDAQCPGSPKISSFPSLPDMSPKKVSATRNVYVSPLRSSKMDALISHNSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDDMDVGLVSDSMVANSLYLQNGSCASSSGAPMKSEQPDS* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2815 736 PANTHER BNACNNG22930D PROTEIN 1 723 - -
Amo06g2815 736 Gene3D - 406 608 - -
Amo06g2815 736 Coils Coil 51 71 - -
Amo06g2815 736 Gene3D - 141 329 - -
Amo06g2815 736 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 723 IPR028309 GO:0006357|GO:0051726
Amo06g2815 736 SUPERFAMILY Cyclin-like 455 624 IPR036915 -
Amo06g2815 736 Pfam Retinoblastoma-associated protein B domain 457 584 IPR002719 GO:0005634|GO:0051726
Amo06g2815 736 Pfam Retinoblastoma-associated protein A domain 138 339 IPR002720 GO:0005634|GO:0051726
Amo06g2815 736 SUPERFAMILY Cyclin-like 146 341 IPR036915 -
Amo06g2815 736 MobiDBLite consensus disorder prediction 110 133 - -
Amo06g2815 736 MobiDBLite consensus disorder prediction 611 631 - -
Amo06g2815 736 SMART RB_A_2 138 339 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2815 Amo-Chr6 93366892 93372105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2815 1 736 Core Cell Cycle Gene Families AT3G12280 72.667 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Amo06g2815 RB_A 6.9e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2815 K04681 - gmx:100779266 1284.24