Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2805 ATGATGGCTACTCCAACTAAACCAATGGCCGTAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATCGAAAACTGTCCTGTTCCAAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCACTAATTGAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGCTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTTGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTCGGATGGGTGTTTCATCTGCTTTATGCAATGCCGGAATGTTTGTCTGGGATTGGCCTAACGTTGCTCGTGGAGAAGGATTTGTTCCCCCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTGGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTATACCGCATCGAACATGGCTGGCTTACTGACAACTATGAGATCACACAGCCTTCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAAGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATACAATGGCAGTGGAAGGGAAAGGTCAACGTAAATTTGTGTATCTCAGAAACTTCAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAGGAGAATACGAATACTGTCGCCGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATGAGAAACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAAGCAGGAAGCAAGAGGAAGTTCCTTGATCCAGTGGGGGTAAAGATGATACGCTGGGAACATTTCTTGCCTCTGCAACCTACCAGCTACTTGGAGTATCTTCTGTACTTCCCTTTTCCTATCATTCTCATTATCAACTTAGAATTTGAAGCATTTTTCAAGTTGTAG 1644 0.4221 MMATPTKPMAVMLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPLIEGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMLLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSRMGVSSALCNAGMFVWDWPNVARGEGFVPPRGGSVEVAGYLMGCHINDNLEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNYTASNMAGLLTTMRSHSLLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVKLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTMAVEGKGQRKFVYLRNFKKDKKGKGLPEENTNTVAGGGSSDEFSDEERLVMEEHDESSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYEKLGVNKLEDLFEKVNDIVVLVEEAGSKRKFLDPVGVKMIRWEHFLPLQPTSYLEYLLYFPFPIILIINLEFEAFFKL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2805 547 CDD LOTUS 432 498 - -
Amo06g2805 547 ProSiteProfiles OST-type HTH domain profile. 431 505 IPR025605 -
Amo06g2805 547 ProSiteProfiles OST-type HTH domain profile. 307 379 IPR025605 -
Amo06g2805 547 CDD LOTUS 308 377 - -
Amo06g2805 547 CDD PIN_limkain_b1_N_like 48 173 - -
Amo06g2805 547 PANTHER LIMKAIN B LKAP 19 514 IPR024768 GO:0005777|GO:0010468|GO:1903231
Amo06g2805 547 Gene3D - 40 192 - -
Amo06g2805 547 Pfam NYN domain 48 185 IPR021139 GO:0004540
Amo06g2805 547 Pfam OST-HTH/LOTUS domain 309 374 IPR025605 -
Amo06g2805 547 Pfam OST-HTH/LOTUS domain 432 496 IPR025605 -
Amo06g2805 547 MobiDBLite consensus disorder prediction 386 405 - -
Amo06g2805 547 PANTHER - 19 514 - -
Amo06g2805 547 Gene3D - 305 376 IPR041966 -
Amo06g2805 547 Gene3D - 427 501 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2805 Amo-Chr6 92904682 92906490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2805 46 198 C2H2 Transcription Factor Family AT5G61190 44.444 8.86e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2805 - - ahf:112715639 928.702