Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2801 ATGCGACAAGGGAAGAAGTTGAAAAATAAGAATGGTGATTTTGTTCGTTACACGTATCTGTGTAATAGACAAGGGTTCAGAGACAAGAAGTGGCTAGAGAAGGTGGATCGGAAGAGGGAGCACAAGGTAGTGACTCGTTGCGGGTGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGATAGTGGGAGATGGATTGTGTCTCTTTTTGTGGAGGAACATAACCATGAGCTGCTGCCTATGAAGTATGTGGACTATCTACCTACACACCGGAGATTTGTGGAAAGCCGATATGGCATACTTGAGTTTGTAACCAATTTTCAACGATGTGTGGACTTCCTGAGGGACAATGAGGAAGAGCTTGACTTCCGATCATCGTACGGGACACCGGTCCTTCAAACGCAGTTCCCGGAGTTAGAAAAGTCAGGGGCAATAAACTTCACACGGGAAATATTCTCAAGATATCGTGAGTCACTTAAAAGGTGTGTTCGGGTGACCATATTGGAGTGCATCGAACGTGAGGATAGGTGTGTGTATGTAACACAGAAGTATAGAAGACCGAATTCACGGTGGGATGTGGTTCATATGAAAAGGAAAGAGGAGTTTCTTTGCAGTTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATTCTGGCAGTTTTGGTTAGGTTAGATATTGATTCCCTTCCTAAGAGTCTTGTGTTGGCGCGGTGGTCCAAAGCCGCGAAGGAAGATCTTTGCTACGAACCGTTAAGCAGCCGATATAGTGATGCGGGTGTTTTGTATCGGAGTAGAGTGGGTGCATTCCTCCAGCACTGCAAGCGGTTAGCAAAAGTAGCATGTATTAGGGAGGAGGACTTTAGGCAATATTTAGCTAAGGTTGTAGAGGATACATGTTGGCTTGAAAAAAAAAATGGACTAGGAGGTGCAGTTGCTGGGAATGGAGCTGGCAACAGTGGGGGAGGGGTTAGGGATCCTATTAGTGTCAGGACGAAAGGCACAGGACGTGGTAATGAACCTCTTGGGTCTAGGGGTATCAAGCGGCGTAAGTGCAGCACATGCGGTTGTGTTGGTCATCGAAGGACCCGCTGTCCCAATGCTCCACCGACATCAGCACCCTCAACCCAGGGCGAGGGTGCAAACATCGGTTTCGATGCATTAATTGGTGGGTATTCGGAAGTGCTCATTCAGCATGGGTTGCTAATGGTGCAAGTATGTGTTATTGGTCATGCTGATGTGTTGGAATCTCTGATGATTTTAAGGTGGGCTGGTGGTGTTGGTGTGCCTCATAATATTTCACTTAGAGATGCTGTGACTGCAGTGCGGGCAAGGATCGAGTGTGGACTTCTGACTGAAGCATTTATGCATCACAGGAATCTCTGCACAAGAGTGAAAGAAAAGAGCTTCAATAAAGGATCACCTCTAGAGACTGCTGATGTACCAAAAGGGCAACTTAGTTATTGGGTGGAGGTCTTGGTAACCGAGATTTGTTGCTTGTGTATAAGGAGGAACTTAGCGAATGGAATGCTAGAATTGCCATAG 1545 0.466 MRQGKKLKNKNGDFVRYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPVEMRIKPKGDSGRWIVSLFVEEHNHELLPMKYVDYLPTHRRFVESRYGILEFVTNFQRCVDFLRDNEEELDFRSSYGTPVLQTQFPELEKSGAINFTREIFSRYRESLKRCVRVTILECIEREDRCVYVTQKYRRPNSRWDVVHMKRKEEFLCSCLRMESFGLPCVHILAVLVRLDIDSLPKSLVLARWSKAAKEDLCYEPLSSRYSDAGVLYRSRVGAFLQHCKRLAKVACIREEDFRQYLAKVVEDTCWLEKKNGLGGAVAGNGAGNSGGGVRDPISVRTKGTGRGNEPLGSRGIKRRKCSTCGCVGHRRTRCPNAPPTSAPSTQGEGANIGFDALIGGYSEVLIQHGLLMVQVCVIGHADVLESLMILRWAGGVGVPHNISLRDAVTAVRARIECGLLTEAFMHHRNLCTRVKEKSFNKGSPLETADVPKGQLSYWVEVLVTEICCLCIRRNLANGMLELP* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2801 514 SMART 26again6 201 228 IPR006564 GO:0008270
Amo06g2801 514 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HOS1 418 514 IPR044718 GO:0004842|GO:0016567
Amo06g2801 514 Pfam FAR1 DNA-binding domain 7 79 IPR004330 -
Amo06g2801 514 ProSiteProfiles Zinc finger SWIM-type profile. 191 226 IPR007527 GO:0008270
Amo06g2801 514 MobiDBLite consensus disorder prediction 319 345 - -
Amo06g2801 514 Pfam Nuclear pore complex assembly 418 514 IPR025151 -
Amo06g2801 514 Pfam SWIM zinc finger 203 223 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2801 Amo-Chr6 92845404 92848949 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g2801 ELYS 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2801 - - adu:107485726 597.045