Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2798 ATGAGTAGTAGTACTAAGAAGACAACATGGAAATCTATGATGTTGATCCTAAGTTGTTGCAATTGCAAGAGTGAATGCAATTTGGAAATGGAGGAAGAAGAAGAATCAGAGAAGAAAAAATTGAAACAAGGTTCATTCCAGAGGCTATGTTTATCAGATGTAAGCAATTCAAGTTCATCACAAGCAATTGAAGATCTTTCAGTGTCACTAGCTGGATCAAAGCTTTATGCATTCACACTTGAGGAGTTAAGAGAAGCAACAAACAATTTCTCATGGAGTAACATGCTTGGTGAAGGTGGTTTTGGTCCTGTTTACAAAGGCTTCTTTGATGATAAACTTAGGCATGATTTGAAGCCTCAAACTGTTGCTGTTAAAAGATTGGACTTAGAAGGCTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTGGGGCAGTTAAGACATCCACATCTTGTTAAGTTAATTGGTTATTGTTATGAGGATGAGAACAGGCTTTTGGTGTATGAATACATGCCAAGAGGAAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGCTGCCATGCCATGGTCAACAAGGATGAAAATTGCATTAGGAGCAGCAAAGGGATTGGCCTTCCTTCATGGAGCAGATAAACCTGTAATATATAGGGATTTCAAAGCTTCAAATATCTTACTAGACTCAGATTTTACGGCGAAACTGTCGGATTTCGGTCTGGCTAAGGATGGACCTGAAGGGGAAGACACACATGTAACAACAAGAATCATGGGAACACATGGCTATGCTGCTCCTGAATACATCATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTTGTTCTATTGGAACTAATAACAGGAAAAAGGGTAGTGGACAAGTCCCTCACAAACAGAGGAAAAAGCTTGGTGGGGTGGGCAAGGCCTATGTTAAGAGACTCAAAGAAATTGAAGCAAATCATAGATAAAAAATTGGAAGGTCAATTCCCCATGAAAGGTGCCATGAAGGTTGCTTCTTTGGCTTATAGATGCCTATGTCACCATCCAAATCCAAGGCCTACTATGAGTGATGTTGTCAAGACATTGGAGCCACTCCAAGACTTTGATGATATTTTCTTGCGGCCATTTGTGTATGTTGCCACTAATCAAAATGGTAACATAGATACAAGGTAG 1188 0.4024 MSSSTKKTTWKSMMLILSCCNCKSECNLEMEEEEESEKKKLKQGSFQRLCLSDVSNSSSSQAIEDLSVSLAGSKLYAFTLEELREATNNFSWSNMLGEGGFGPVYKGFFDDKLRHDLKPQTVAVKRLDLEGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHGADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELITGKRVVDKSLTNRGKSLVGWARPMLRDSKKLKQIIDKKLEGQFPMKGAMKVASLAYRCLCHHPNPRPTMSDVVKTLEPLQDFDDIFLRPFVYVATNQNGNIDTR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2798 395 Gene3D Transferase(Phosphotransferase) domain 1 173 377 - -
Amo06g2798 395 Pfam Protein tyrosine and serine/threonine kinase 92 367 IPR001245 GO:0004672|GO:0006468
Amo06g2798 395 PIRSF ILK 3 49 - -
Amo06g2798 395 PIRSF ILK 80 375 - -
Amo06g2798 395 PANTHER KINASE 1B 29 392 - -
Amo06g2798 395 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Amo06g2798 395 Gene3D Phosphorylase Kinase; domain 1 51 172 - -
Amo06g2798 395 CDD STKc_IRAK 96 370 - -
Amo06g2798 395 ProSiteProfiles Protein kinase domain profile. 90 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2798 395 PANTHER OS01G0588500 PROTEIN-RELATED 29 392 - -
Amo06g2798 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2798 Amo-Chr6 92808043 92810333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2798 78 367 Glycoside Hydrolase AT3G07070 52.901 2.27e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo06g2798 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2798 - - gmx:100802636 646.736