Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2780 ATGGGTTGTGAGATGGAATTGGAGAGTGAATGTATTGAGGACATGGAAGTTGAAGTCCTGCCTTCAATGTGGCCGGAAGATATCGGAACAGACGCAGGAAAGCAGTTCAATATAGAGAAGCCTGGCAGGGATCAAGACATGTTGGAAGATGTTACAATCATGGAGGAACCAACCATAGCTGATTTCCAGCGATTAATGGAGCTAACTAACTATACAGATAGAGGTTCTTCACAATTGGCCTACTTAATGAAACATTGGGAGTATAAGCAGGCCAACGCCGTTCGCCTTCTTAGAGAAGAACTCGACAACTTGAGCAGGCAAAGGCAGGAAGTTGAGCAAAGGAGGCTGGAGATATTGCAAGAGAATCGATTCGAGGAAGACTATGGAGATGATAAGAGGCCAGTTTCTATATTGGATGAAGTTTATTACACTTGGCAGGATCTGCCAAGCCGGAAAAGTGATGTTGTTGTGCAGAACAAGAGGATTGAGATTGATGCAGAGTATGATACTGTTGTATACTGGAAGCAGCGCGCGCTGCAGCTGGAAAAACAGTTGGAGGCGAGTATGCAGCGCGAGCAGACGCTTATGGATAAGTTGCAAGAAAGCATTAAGACTATTGAGAGGCAGTCCTCGCCGGTTGAAGAGTTGTCGCAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTTATACTTCAAAATGCACCTGTTGTCATTGGTCACCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCACTATCCAAGATTGCAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACAGGTTCTGGCGTGAAAGAATCTCAAGATTTTAAGAGAGAAGTTATGGAGAAAGGATTACCTGCAAAAAAGGAAATCACATTCGAGACAGATCTATTCGGGTCAAAAACATTCTTGATATATGTAGAACCTGTGTTTAGCAAGGCAGGTGAAACAATAGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCGAAGCTTCGTGAAGAGATTGCGGTTCAGAAAGCAAAGGAGACTGAACTGAATAAAACCATTCATATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCTTTGTCCGGGGTTGTGAGCATGGCTGAGATTCTTTCTACGACAAAACTTGATCGCGAGCAGAGACAACTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTCATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGTTAG 1314 0.4231 MGCEMELESECIEDMEVEVLPSMWPEDIGTDAGKQFNIEKPGRDQDMLEDVTIMEEPTIADFQRLMELTNYTDRGSSQLAYLMKHWEYKQANAVRLLREELDNLSRQRQEVEQRRLEILQENRFEEDYGDDKRPVSILDEVYYTWQDLPSRKSDVVVQNKRIEIDAEYDTVVYWKQRALQLEKQLEASMQREQTLMDKLQESIKTIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHYPRLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2780 437 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 437 - -
Amo06g2780 437 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Amo06g2780 437 Coils Coil 343 363 - -
Amo06g2780 437 Coils Coil 94 121 - -
Amo06g2780 437 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Amo06g2780 437 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 437 IPR036097 GO:0000155|GO:0007165
Amo06g2780 437 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 8 437 - -
Amo06g2780 437 Coils Coil 182 209 - -
Amo06g2780 437 CDD HisKA 374 433 IPR003661 GO:0000155|GO:0007165
Amo06g2780 437 Gene3D - 354 437 - -
Amo06g2780 437 Gene3D PAS domain 213 349 - -
Amo06g2780 437 ProSiteProfiles Histidine kinase domain profile. 379 437 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2780 Amo-Chr6 92583544 92587204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2780 1 437 Histidine Kinase Gene Family AT5G10720 70.023 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2780 - - gmx:100801640 781.556