Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2767 ATGGTGATCGTTAATGGTGTTGCTAGCAGAACAAGGAGCAAGAAGAAAGAGAGGTCTTTGAATCCGTCACCGTGTGTTGGATCAGGATCCCGAACATTGTCTTCCTCGTCATCAAAGTCCAGCGAGAGAAAGAAGGGGAAAAGAAAGGCGGAAGTTGATGTTGAGGTTGTGGAATTTGACTATGAGGCTTTCCATGAAAGATGGATGATGGAACCTCGGCAACCTCTTGAGATGCCTCCACCAAGAGACGTGATTGAACTCAGCGATGATAGTGATGATAATGCAGCTGCTGAGGGATTGCAGAAGCTTCGTCGTGGGTATGTTAATGAAGAGAAGAAGGAAGAAGTTCAAGAAAGAAACGTGTTTCCTATTGATGGTGCTGGAACTTCTGCCAACGATCCTATAATCGTTGGTTTGAGTGATACTAGTAGTGATGAAGGCACTGATGACAGTAACGAGGGCCGTGGAAGAAGTTTGGACTGGGATTTTGGATTATCAAGTGAGTCAGAGGACACTGATAACAGTGATGATGAAGATTTCAGAGTGGAGGATGAGGGAGAAGGTGAAGGTTCAGCATCAGCTTCAGCATCAACTTCAGCTTCAAGCAGTGATGATAGTGGTTCAAGTTCTTTTGATGATGAGGATGAAGAGGAGGAAAAGGAGAAGAGGAGATGTAAGAGGAGGAAGAAGGAGAAGAAGAGAAAAGAGCCAACTTTTGAGTCTCATAGCAATAAAGTTTTGCGCTGCGACGAGGTGATTGTGGAAACTGAATGCTCTGGAATTTGCAAGAAGAATGGTGAGAATAAGAACAATTCATCGTCAACCGAGAATAATGTATTTGATCATCAGCCAGAGAAAATGCTACCAAAGGATGCAGATTGTGCTAGTGTTCTCTTTGGAGAACGCAATACGGAGGGTTGTTCTTCAGAAAAAAATGAAGATAAGGAAATTAATGTAGCTAAGAAACCACTGGAGGTTTGTTCTTCAAAAAAGAATGAAGATAAGGAAGAGAATGTAGTTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTAGCTAAGAAACTAGTGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAGCGAAGACAAAGGAAAGAAGGTGGCAAAGAAACCAATGCCTGCGGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCCCACCTGAGGAGGATGATTCAGAAAAGGATGAAAAGAAACCGGTAAAACAGAAGGGTCGTGAAAGTGTGTCTGATTTTTTGGCAAAGGACAAAGGGGACTCGCCGATGATCGATGAAAGAGTGCCAATGAATGATGAAAGAATGGAGAGTGCAGAGGAAGAGAGGGTGAACAAGAAGGAAGGAGAGGCTGAAGGGAAGCATAAGGCCGGGGCAGATTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTAGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTTGGATTAAGCATAATCCAGATAGTGTTCATAAGCAAGATACAATCTCAAAGGAACCAGCTCTCGATGTTCAAAGAAAATTTTTTTTTCAAAAGAAAGTGCCAATTGAAAAAACTGAATCTGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATGCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGGTTGGCTGTGTTGAGAATGTCGAAACACAACAGAACATAGAGGCTCCGGCAACCAATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGGTCATAGACATAAAAGGCATGCCGGTACCCTTTGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGAGGCTCCATTTGGTGTCCGAGAAGGTGGTTACTSTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAGGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTRGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACTGGAAAGACGCGGCTGACCATCGTGTTCCTCCAGACATACTTGGAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGCTAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACATCAGGAAAAGAGCACCGAGCTGCATGGAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCGGATGGTGAAGCTGTATTCTTGGTTCAAAGAACSAAGTATTCTTGGAATCAGCTACAGRCTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAAAAGCTTGAAGGAGAATGCTGCCAGAGGGGTCATGGGAAAAATCCTMCTTGAAGTTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTSCTTTRCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTTTCAGTTGGGAACCAGTTTCTTCAATCAGAACTGAGAATCTAAATGATGAGAATATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATCTTCCTGGCTTGAAAGATTGTGTGGTGACTTTGATGCCGGGTGATTTGCAGAAAAAACTTCTTGAGGGCATTGAAGGACATCCGAACACACTGCCTTTTGATAGCAAGTCGGCCTTGGTGTCCGTCCATCCATCCCTTTTCCTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGAGATGGAACATTTGAAAGACCTCAAACTGAATCCGAATGTTGGCGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAATGAGAAAGTGCTTGTGTTCAGCCAGTTCCTTGATCCTTTGACTTTAATCATGGAGCAGTTAAAGTCAATTTTCAATTGGACTGAGAAAAAAGAAGTTTTCTACATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATCCAAACAGCCAAGCAAAAATCTTGCTTGCATCCACTAAAGCTTGCTGTGAAGGAATCAGTCTGGTTGGTGCTTCCAGGGTGGTGCTGCTAGATGTGGTTTGGAACCCCTCGGTRGAAAGGCAAGCTATCAGCCGTGCTTATAGGCTGGGGCAAAAGAAGGTGGTCTACACTTATCATCTCATAACACATGGGACCACCGAGTACACAAAATACTGCCATCAGGCCAAGAAGGACCGGTTGTCTGAACTAGTCTTTTCAGCAAAGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAACATGGTGCGCCATGGGAAACTGAGGGACTTGTTTGGTGACTGTGTGGTGCAGCCAAAGGACTGTGATTTGATTGATAATTTGGATCCTAAAATTTCCTGA 3867 0.4339 MVIVNGVASRTRSKKKERSLNPSPCVGSGSRTLSSSSSKSSERKKGKRKAEVDVEVVEFDYEAFHERWMMEPRQPLEMPPPRDVIELSDDSDDNAAAEGLQKLRRGYVNEEKKEEVQERNVFPIDGAGTSANDPIIVGLSDTSSDEGTDDSNEGRGRSLDWDFGLSSESEDTDNSDDEDFRVEDEGEGEGSASASASTSASSSDDSGSSSFDDEDEEEEKEKRRCKRRKKEKKRKEPTFESHSNKVLRCDEVIVETECSGICKKNGENKNNSSSTENNVFDHQPEKMLPKDADCASVLFGERNTEGCSSEKNEDKEINVAKKPLEVCSSKKNEDKEENVVKKPVEGCSSKKNEDKEKNVAKKLVEGCSSKKNEDKEKNVAKKPVEGCSSKKSEDKGKKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSPPEEDDSEKDEKKPVKQKGRESVSDFLAKDKGDSPMIDERVPMNDERMESAEEERVNKKEGEAEGKHKAGADCESSYKEREQHRVTTNPSRPKEAPLIELLAECFWIKHNPDSVHKQDTISKEPALDVQRKFFFQKKVPIEKTESEKERDMLWEEMDALLRLGEVDSLVGCVENVETQQNIEAPATNCKHKFVHDEETGIYCILCHWMVIDIKGMPVPFVSEYPREGSRKKLLSDGPNGLCFDEAPFGVREGGYXNKEGTVWDLIPADTKQNLYAHQLEGFEFLWKNLAGTMELPKLKSCDXNSTGGCIISHAPGTGKTRLTIVFLQTYLEVFPDCHPMIIAPASLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHRAAWSKVGGSAPSQEDIRMVKLYSWFKEXSILGISYRLFQRLTGLKRDKSLKENAARGVMGKILLEVPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPXFXDTIPPELKKFCQRRLMQEKKESKGFSWEPVSSIRTENLNDENIKQLKQLMDPFVHVHKGSILQKNLPGLKDCVVTLMPGDLQKKLLEGIEGHPNTLPFDSKSALVSVHPSLFLCCTLSPKERALVEMEHLKDLKLNPNVGVKTRFLVEFVRICDAMNEKVLVFSQFLDPLTLIMEQLKSIFNWTEKKEVFYMSGKLDKNQRQLLIHSFNDPNSQAKILLASTKACCEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKDRLSELVFSAKNTEQDEPKSSAVEFEDEILDNMVRHGKLRDLFGDCVVQPKDCDLIDNLDPKIS* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2767 1288 Gene3D - 1006 1270 IPR027417 -
Amo06g2767 1288 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 310 1281 - -
Amo06g2767 1288 Coils Coil 215 236 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 1 52 - -
Amo06g2767 1288 Pfam Helicase conserved C-terminal domain 1086 1197 IPR001650 -
Amo06g2767 1288 Gene3D - 690 988 IPR038718 -
Amo06g2767 1288 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 310 1281 IPR044567 GO:0080188
Amo06g2767 1288 MobiDBLite consensus disorder prediction 191 207 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 23 37 - -
Amo06g2767 1288 CDD DEXHc_ATRX-like 709 940 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 83 120 - -
Amo06g2767 1288 SMART ultradead3 705 947 IPR014001 -
Amo06g2767 1288 Pfam SNF2-related domain 730 1019 IPR000330 GO:0005524|GO:0140658
Amo06g2767 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1238 IPR027417 -
Amo06g2767 1288 CDD SF2_C_SNF 1076 1208 - -
Amo06g2767 1288 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1238 IPR001650 -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 433 524 - -
Amo06g2767 1288 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 735 935 IPR014001 -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 262 527 - -
Amo06g2767 1288 SMART helicmild6 1108 1197 IPR001650 -
Amo06g2767 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 990 IPR027417 -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 306 401 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 72 246 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 263 281 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 166 185 - -
Amo06g2767 1288 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2767 Amo-Chr6 92371325 92375857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2767 1095 1227 RAD5 or RAD16-like Gene Family AT5G43530 38.346 1.59e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo06g2767 SNF2_N 2.4e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2767 K10875 - aip:107627890 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3101 16 133779189 133783450 Amo06g2767 06 92371325 92375857 hybridization