Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2757 ATGGGTGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGCCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACCCTTGCAGTCGATGCGAGCATATGGATGGTGCAATTTATGAAGGCGATGCGCGATGAGAAGGGCGAAATGGTTCGAAACGCTCACTTGCTGGGCTTCTTTCGTCGAATTTGCAAGCTCTTGTTCCTCAGGACAAAGCCAGCCTTCGTCTTCGACGGCGGAACCCCCGCCCTAAAGCGCCGCACCGTCATCGCCCGCCGCAGGCAGCGTGAGAACGCCCAGGCCAAAGTCCGCAAGACTGCAGAGAAATTACTTCTCAATCACTTAAAGGCATTGAGGTTGAAAGAAGTTGCTGATGACATTAAGAACCAGAGGCTGCAGCAGAAGAGTGAAGCCAAGGGATGCAAAAAACCTGATCGGATGGACTTTGTCGATAGTGATCCAGGAAAAAGTAACATGAAAGAGATAAATGAAATGTCTTCAGCTAAACTTGCAGCTACAGAGGCAGGAAATTTCTTGCAAGAAGTTGTGTCAAGAAGTCGCAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATATCTGCAGAGGAGAACGGAATACTAGCCGGGAAAGAAGTGCCATCTACTGTACCTAATACTTCAGAGGAGAAATTTGACACAGATGGAGAAATGATACTGCCTTGTGACAATGAAGTAGATTTAGCTGTTTTAGCTGCTTTACCACAGTCGATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAAAAGCACCAGTGGAAGATGAACTGCTGAACCAATGTGAGGTCAATGATAGGGGCAAGGGTAAGGGGATTCTGTTCAGAGAAAGTGACTTGGGTGGTTGTAGCTCAAAATGTGACAATGTGATATCAACAAATGACAATCAAGACAAAATTGATGAAATGTTAGCAGCCTCTATTGCTGGGGAGGGCATTGCAAAGTCTATGAGTAATGCATCAACTTTTTTTGAGGCTTCAGCCATTGAGGAAGAGGATGGTGACTATGATGAAGATGAAGAGATGATACTGCCTGCAATGCATGGTGAAGTTGATCCAGCTGTTCTGGCCTCTTTACCTCCATCAATGCAACTGGATCTCCTAGTTCAGATAAGAGAGCGATTAATTGCAGAGAATCGACAAAAGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTTTCTGAGCTACAAATAGAAGCTTACCTTAAAACAGTTGCTTTTCGACGAGAGATAGATGAAGTGCAAAAAGCTGCTGCTGGAAGAGGAGTAGGGGGTATCCAAACTTCACGGATTGCATCTGAAGCCAACAGGGAGTACATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTGCATCAAGCAGATCAGAGAAAAATGATGATGCTCATCGTAAGGCTCAAGGAACACATCCTGTGGAGAATCTTGCTAATATTATTGCATCAGCTGGTTCTAATACTACAAGTGGATTGGTTTGCAATGAACCTAGTGAATCTGTTGATGAAAGAATTCAGACCTTCCTAGATGAGAGGGGTCAATTTCGAGTTAGCAGATCAAGAGCTATGGGGATGCGTATGACCCGAGATTTGCAAAGAAATTTGGACTTGATGAAGGAGATTGAGCTGGAAAGAACACACATCAACAAGGCTTCAAATATTGATGCAATTTTGAGTGCAGAGAATAATGGTCCATCAAAAAGTTCTGGGACCAATTCTGTTGGTAAATTAAAAACTATGAATGTTGATCTAGTTGGTGAGTGTGTGCAAAATGAGCAATCTGTCTTTGACAAGGATACTTCTATAGAGGTATCCTTTGAATATGATAGCAAGAATGCACTCATTGATGCTGAAGATGAAATATTTGCTAATTTAGTAGGAGGAAATTCAGGGACAGTATTTCATGCTGATGGTACTCCAGCAAAAGAACATCCTTCTAATTCAGATTCAGATTGTGACTGGGAGGAAGGAATTGTTGAAGGGAAGAGTACCTTCATTCCTGGAAATAATAAAGTGGAATGGAATTCTTCTGTTGCTGAAGGGGATAATAATGATGAGAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGATAAAAGTACCATATGTTGCCCATCTGAGTCTGGGAAAAAGCCAACTCGAGGTCAATTGGAGGAGGAGTCTAATTTGCAGGAAGCAATTAGGAGAAGTCTTGAGACTATAGGAGATGGAGAGCTTAAGCACCTATCATCTGTAGATGAGCATTCAAATGCTGATGAGAAAAAATTGGATTCCCATGGTGATTATTTGGATGTTTCTGGTGCAATGAATTTAAATGGTGAAGATGCATTTGTGAAGATAAAAAATAGTATGGCTGTTTCATCTTCTCCTAGGGAAGATGGTTCTAAACAAAATATATTTCATGGAAATGTGGATGGCGATGGTTATGTCAACTCCCAAACTTCTGATTTTCCTAGGGGTCAGTCAAAGTCATATGTAGCATCTATTTCTAGTAACCTGGATATATTGATTGAAAAGCCTAATGTACTGAATAGATGCTCTCATTCTGAATATTCGACTTCAGATGCAAATATGATGAAGGACAATGACCATATGGCTGCAGAACAACTGTTGGATAAACATTGTGATGATACTAAGGTGTCTTCCGATGGCAAAAATGTTTCCAAGGATAATCCACTTGGTTCCACTGAATCATCCTTGAAGGGATCAACAGAAAATGTTGATATTGGGCCAAAGTTAGCTGCAGTGGACAATGATGGAAGTTTCAGAGGAGAAAGAAATATTGATCTTGTGAAAAATGCAGTTAACACCTCAGGAGATTTTCCAGCACATGTAGACGAGGTTAGATTGGAGGAGGAAATACGAATACTTGGTCAAGAATATATAAACCTTGAAAATGAGCAGAAGAAACTTGAAAGAAATGCAGAATCTGTCAATAGTGAATTGTTCACAGAATGTCAGGAATTACTGCAAATGTTTGGATTGCCATATATTATTGCCCCAATGGAAGCTGAGGCACAGTGTGCTTTCTTGGAAACTACAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAATGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGGGAAAAATTAGTACGCATGGCACTACTACTTGGGAGTGATTATACTGAAGGTGTAAGTGGCATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCGTTCCCTGAGAAAGATGGCCTCTTGAAATTCCGCCAGTGGGTTGAATCACCAGATCCCACCATTCTTGGATGGTTGAATACAAAAGGTGGATCAAATACAAGAAAGAAAGGATCAAAAGAGACTTCGTCGGATCAAATTAATAGTCATATTAAGGAACAAGAGGATTCGCTGGATTATGACCAAGAAATCAAGCAAACATTTTTTGAGAAACATAGAAATGTTAGCAAGAATTGGCATATTCCATCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTATTCTCCACAAGTTGACAAGTCAACCGAGCCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAATTACTATTACCTGTTTTAAAGGAATATAACAAACACGAGACTCAACTGCGTTTGGAAGCGTTTTATAGTTTCAATGAACGATTTGCAAAAATTCGAAGCAAGAGAATTAAGAAAGCTGTAAAAGGGATTACTGGTAAGCAGCCTTCAGAATTGAAAGATGATTTCAACAGTGGCAAGAGTAGGAGAGGAAATCATCTAGAATCTGAGGACAAAAATTTTGAGAATCTAAAGGGGACAAAGGAAAGTCTTGAAAGTTTGAAGAAACCTAAAGTGAAACAATCAAGGAAAAGGAAGAATGACGGGGACACTCTTGGGAAGGCAATGTCAAAGAGAAAGACAATCACTGATGGTCCTTCAGCTTCTGCTATGTCTGCAGTGGAGAATATACAGCCAGGTACTGAGTCTGAAAAAGACCAAAGTGATAGTAATCCATTGATTTCAAATAGAAGTGGGAGGGGCAGAGGAAGAGGCAGAAGTTTGGCAGTAAAACATGGAAGGAAAAAGGAAAGTCTCATTTATCAATCATCTGAAACATCATCTTCTAGTAGCGACACTGATGATCATGTTGATATGTCAAAAGTTCCTCAAGAGGTTCGAAGGTCCTCACGTTCCAGAAAACCTGTCAGTTATTCACTTGAGAACCTAGAAGATGAAGAACTCAATGAGTCATTTGATACGAGGAATCAATCATCCTTGTGTGAAGATCCATTAGAAGAAAATTTATCTGATATTCCTGGTGCATGTGGGGATTCTGCAACTGGTTTAAGCAGAGGTAAAGAGAGTGATATGATAAGTAGTGCTCCAACCAGGAACTTCCCTAGAGACGATCTTGGGTGGGAAGGTCAAATTTTCACAGATGCTGATGAAACTACTCATCCAGATCCAGGAATTGGTGATGGTGATATTACTGTTAATGCTGACTCTTGTGATGACTACCTTAAACTAGGAGGTGGTTTTTGTTTAGATGATAGTGATGAACCTAGCAATCAGAATGCAGTTGATGGTGTCAATACTGCTGATACTGAAGGATTTCTGCACTGTTCTGTTATGATGGATGAGACTGACCATCATAAAAATGGTTCTGAGATATTATTTTCTGGCACCGATAAAGCTCCCAGCGAGATGCAAGAGGGACGCAATGCCTACAATGTTGACAACGAGCCAAATGATAACCTTCCAAATGTTAGTGCCAATGATCAAAATGAAATGGGGGTCTCTGTACCTGAGAATGTTAATCATAATAATGGAAACTACAATGGGGCATTTAGTGCAATGCCATTTTTGAGGAAAAGAAGGAAGAAGTAG 5022 0.4076 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPAFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKEVADDIKNQRLQQKSEAKGCKKPDRMDFVDSDPGKSNMKEINEMSSAKLAATEAGNFLQEVVSRSRNQEELDEMLAASISAEENGILAGKEVPSTVPNTSEEKFDTDGEMILPCDNEVDLAVLAALPQSMQLDILAQLKGKKTKAPVEDELLNQCEVNDRGKGKGILFRESDLGGCSSKCDNVISTNDNQDKIDEMLAASIAGEGIAKSMSNASTFFEASAIEEEDGDYDEDEEMILPAMHGEVDPAVLASLPPSMQLDLLVQIRERLIAENRQKYQKVKKDPAKFSELQIEAYLKTVAFRREIDEVQKAAAGRGVGGIQTSRIASEANREYIFSSSFTGDKQELASSRSEKNDDAHRKAQGTHPVENLANIIASAGSNTTSGLVCNEPSESVDERIQTFLDERGQFRVSRSRAMGMRMTRDLQRNLDLMKEIELERTHINKASNIDAILSAENNGPSKSSGTNSVGKLKTMNVDLVGECVQNEQSVFDKDTSIEVSFEYDSKNALIDAEDEIFANLVGGNSGTVFHADGTPAKEHPSNSDSDCDWEEGIVEGKSTFIPGNNKVEWNSSVAEGDNNDESEVEWEEGDCDGDKSTICCPSESGKKPTRGQLEEESNLQEAIRRSLETIGDGELKHLSSVDEHSNADEKKLDSHGDYLDVSGAMNLNGEDAFVKIKNSMAVSSSPREDGSKQNIFHGNVDGDGYVNSQTSDFPRGQSKSYVASISSNLDILIEKPNVLNRCSHSEYSTSDANMMKDNDHMAAEQLLDKHCDDTKVSSDGKNVSKDNPLGSTESSLKGSTENVDIGPKLAAVDNDGSFRGERNIDLVKNAVNTSGDFPAHVDEVRLEEEIRILGQEYINLENEQKKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAFLETTKLVDGVITDDSDVLLFGARNVYKNIFDDRKYVETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEKDGLLKFRQWVESPDPTILGWLNTKGGSNTRKKGSKETSSDQINSHIKEQEDSLDYDQEIKQTFFEKHRNVSKNWHIPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSELKDDFNSGKSRRGNHLESEDKNFENLKGTKESLESLKKPKVKQSRKRKNDGDTLGKAMSKRKTITDGPSASAMSAVENIQPGTESEKDQSDSNPLISNRSGRGRGRGRSLAVKHGRKKESLIYQSSETSSSSSDTDDHVDMSKVPQEVRRSSRSRKPVSYSLENLEDEELNESFDTRNQSSLCEDPLEENLSDIPGACGDSATGLSRGKESDMISSAPTRNFPRDDLGWEGQIFTDADETTHPDPGIGDGDITVNADSCDDYLKLGGGFCLDDSDEPSNQNAVDGVNTADTEGFLHCSVMMDETDHHKNGSEILFSGTDKAPSEMQEGRNAYNVDNEPNDNLPNVSANDQNEMGVSVPENVNHNNGNYNGAFSAMPFLRKRRKK* 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2757 1673 SMART xpgn3 1 98 IPR006085 GO:0004518
Amo06g2757 1673 CDD H3TH_XPG 1076 1207 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 889 918 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1140 1158 - -
Amo06g2757 1673 SUPERFAMILY PIN domain-like 2 1088 IPR029060 -
Amo06g2757 1673 SMART xpgineu 1004 1073 IPR006086 GO:0004518
Amo06g2757 1673 Gene3D - 1 144 - -
Amo06g2757 1673 Pfam XPG I-region 1007 1088 IPR006086 GO:0004518
Amo06g2757 1673 ProSitePatterns XPG protein signature 2. 1007 1021 IPR019974 GO:0016788
Amo06g2757 1673 Gene3D - 1073 1127 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1291 1348 - -
Amo06g2757 1673 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Amo06g2757 1673 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Amo06g2757 1673 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Amo06g2757 1673 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1073 1269 IPR036279 -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 465 482 - -
Amo06g2757 1673 CDD PIN_XPG_RAD2 990 1074 - -
Amo06g2757 1673 Pfam Ubiquitin binding region 235 257 IPR025527 -
Amo06g2757 1673 Pfam Ubiquitin binding region 363 387 IPR025527 -
Amo06g2757 1673 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 262 - -
Amo06g2757 1673 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 304 1673 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 463 484 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1353 1388 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 680 694 - -
Amo06g2757 1673 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 262 - -
Amo06g2757 1673 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 304 1673 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1422 1452 - -
Amo06g2757 1673 Coils Coil 960 994 - -
Amo06g2757 1673 Gene3D - 956 1072 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 898 918 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 133 155 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 675 737 - -
Amo06g2757 1673 Coils Coil 1305 1325 - -
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1132 1158 - -
Amo06g2757 1673 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo06g2757 1673 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo06g2757 1673 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Amo06g2757 1673 SMART HhH_4 1075 1108 IPR008918 GO:0003677|GO:0003824
Amo06g2757 1673 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Amo06g2757 1673 MobiDBLite consensus disorder prediction 1279 1517 - -
Amo06g2757 1673 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2757 Amo-Chr6 92255653 92267314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2757 998 1105 Core DNA Replication Machinery Family AT5G26680 35.135 1.81e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2757 K10846 - gmx:100820295 1956.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3373 16 141645464 141657873 Amo06g2757 06 92255653 92267314 hybridization