Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2746 ATGAAGAAAGCGGAAGGGGAGAGTAGTTTAGATTTAGACAGTGATGTTATTGCATCTGAGATCAAAGCAGGATCAGTAAGTGATCCACTGGCCGAGGCGGTTCGAGGAACCATTCAAAATGATTCAGAGAAGAGAAAGGGCAAAGATGAAGCGAAAAACACAATCCCCTTCTACAAGCTCTTCTCTTTTGCAGACGCTTTGGATTATGCATTGATGATTGTGGGGACAATCGGTGCTGTTGGAAATGGAATGGCAAACCCTTTGATGACCGTTGTTTTTGGGAGCTTAATTGATGCATTTGGAGGGACCTCAAACTCCCAAAAAGTTGTTCATGATGTTTCCAAGCTGGCTCTCAAGTTTGTATACCTGGCTCTGGGTTCCTTTGCAGGATCCTTTCTTCAGGTTTCTTGCTGGATTGTCTCTGGGGAGCGACAATGTGCAAGAATAAGAAGCTTATACCTGAAAACAATTCTGAGGCAGGATGCCGGCTTCTTCGACACGGAAACCAACACCGGCGAGGTTGTTGGAAGGATGTCAAGTGACACTATGCTAATTCGAGAAGCCATGGGTGAGAAGGTAGGACAGTTTGTACAGTTAGTGGCATCGTTCGTTGGAAGTTTTGTCATAGCGTTCATCAAGGGATGGCTTCTTACCCTTGTTTTGCTGTCCTGTATTCCACCTCTTGTTCTTGCTAGCGCCGTCATGAGCATCGTTATTGCCAAAGTGACATCGCGAAGACAAGTAGCATATTCTGCAGCTGCATCTGTAGTAGAAGAGACTATTGCTTCTATCAGAACTGTTGCGTCATTCACGGGCGAGAAGCAAGCCGTGGCTAAGTATAATCAATCATTGTTGAAAGCTTATAAGACTGGAGTTCAAGAAGGAGTGGCTTCTGGATTGGGATTTGGTTCCATTCTTCTCATTGTTTTCTGCACTTATGCCTTGGCCATATGGTATGGTGGCAAATTGATTTTAGACAAAGATTATACAGCAGGGAAAATTATCACCATAATTTTCGCAATTTTGACAGGATCTCATTCTCTTGGACAGACCTCTCCTAGCATGAGTTCGTTTGCAGCAGGACAAGCCGCAGCTTATAAGATGTTTGAAACGATTAATAGGCGACCTGATATCGATGCTTACGACACAACTGGCCGGCAGCTGGATGATATTCGAGGCGACATAGAACTGAGAGAAGTTGGCTTCAGTTATCCGTCAAGGCCGGATGAGACTATATTCAATGGATTCTCTTTGTTCATACCAAGTGGCACAACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGAAAATCAACCGTTATTAACTTGATAGAGAGGTTTTATGATCCGCAAGCTGGTGAAGTTCTCATCGACAACATCAATCTCAAAGAGTTTAATCTGAAATGGATAAGACAAAAGATTGGCCTAGTTAGCCAAGAACCTGTTCTGTTTACTTGCAGCATCAAAGAAAATATCGCTTATGGTAAGGATGGTGCGACTGATGAAGAAATCAAAGTAGCAGCAGATCTTGCAAATGCTTCTAAGTTCATAGACACGCTTCCACAGGGACTGGACACGATGATTGGTGAACACGGAACTCAGCTCTCTGGAGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCCATTTTGAAAGATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCACTTGATGCTGAATCCGAGAAAACAGTGCAGGAGGCTCTAGACAAAATCATGATAAATCGAACCACTGTTATTGTAGCTCACCGCTTAAGCACTGTTAGAAATGCTGCCACTATAGCTGTAATTCATCAAGGAAAAATAGTAGAAAAAGGTTCACATTCTGAGCTCACTAAAGATCTTGAAGGAGCCTACAGCCAACTCAATAGATTGCAAGAGACTAACAGTGAGGCAGAACAGAATTTTTCTGTTGAAACAGAAAACCTTGAATCTACTACAAATTCTTCAAGGCATTCAAGTCAACGGTTTTCTTTTAGAAATTCCATAACTCATGTATCCGGCGTTGGAAACATCAAAGACGATAAAGTTGCTCTTGCAGAAGACACAAACTCAAAACAACCTCCAAAAATACCGATCCGTCGCTTAGCTAAACTAAACAAGCCTGAGATCCCAGTCTTGATACTAGGGACTATAGCTGCAGTGGCCAATGGCATCATATTACCCTTTTTCGGGTTCATGGTTTCAAAGATGGTCAATATTTTCTATGAGCCTGCGGATGAACTCCGCAAAGATTCAAGATCTTGGGCGTATGTTTTCGTGGCGCTTGGCGTATCAGCGTTCTTTATCAATCCCTTGAGGTCCTACTTCTTTTCTGTTGCTGGTGAAAAGCTGGTAAAAAGAATGAGACTAATCTGTTTTGAGAAAATGATTAATATGGAAGTTAGTTGGTTTGATGAAGCTGAGCATTCAAGTGCTGCACTTGGATCAAGGCTGTCCACTGATGCAGCGTCTATTCGAGCTTTGGTTGGCGACGCACTCGGATTAATGGTTCAGAACATAGCTGCTGCAGTTGCAGGCCTGGTGATTGCATTCCAAGCAAACTGGCAGCTCTCTGTTATAATTCTTGTATTGCTGCCTATATTAGCACTTAACGGAATTCTTCAGATGAAGTTCTTACAAGGATTCACTGCAGATGGAAAGTACATAAAAATGGTAAAGGAATTTGTTGAGAAAGATACGTGTCGACATATGAATGTAGAAGGAAAGTATTTAAGATTTATTTCTTGCCCTAACAGAAGATGTAAATTTTTTGAGTGGGTTGATGAAGTTGGTGCAAGAAGTAACGTATCTGCTGCTGCTGTTGAAGTTGTTGGAACACAAAATTCTGCTAAGTTGGAAGCTGAAATGTGGAAATTGGATGCACAAGAAAGAAAGATAGAGAGGCTAAACGTGGAGATAGAGAGATTAATTGTTGAAGCCAAAGAAATAGATGCTTGTGTGGGTAGATTATGTGATGAGTTGAATATTCTCCAAGAACAAGTTGGGAGGTTGGATGACAATATGAAAATTCAATGTAAAATGCAATATATGCTATTTATATTTTTGCTAGTCTTAATAATTGGAATGTGGTTTGCTAGAGATTAG 3108 0.416 MKKAEGESSLDLDSDVIASEIKAGSVSDPLAEAVRGTIQNDSEKRKGKDEAKNTIPFYKLFSFADALDYALMIVGTIGAVGNGMANPLMTVVFGSLIDAFGGTSNSQKVVHDVSKLALKFVYLALGSFAGSFLQVSCWIVSGERQCARIRSLYLKTILRQDAGFFDTETNTGEVVGRMSSDTMLIREAMGEKVGQFVQLVASFVGSFVIAFIKGWLLTLVLLSCIPPLVLASAVMSIVIAKVTSRRQVAYSAAASVVEETIASIRTVASFTGEKQAVAKYNQSLLKAYKTGVQEGVASGLGFGSILLIVFCTYALAIWYGGKLILDKDYTAGKIITIIFAILTGSHSLGQTSPSMSSFAAGQAAAYKMFETINRRPDIDAYDTTGRQLDDIRGDIELREVGFSYPSRPDETIFNGFSLFIPSGTTVALVGQSGSGKSTVINLIERFYDPQAGEVLIDNINLKEFNLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIKVAADLANASKFIDTLPQGLDTMIGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKTVQEALDKIMINRTTVIVAHRLSTVRNAATIAVIHQGKIVEKGSHSELTKDLEGAYSQLNRLQETNSEAEQNFSVETENLESTTNSSRHSSQRFSFRNSITHVSGVGNIKDDKVALAEDTNSKQPPKIPIRRLAKLNKPEIPVLILGTIAAVANGIILPFFGFMVSKMVNIFYEPADELRKDSRSWAYVFVALGVSAFFINPLRSYFFSVAGEKLVKRMRLICFEKMINMEVSWFDEAEHSSAALGSRLSTDAASIRALVGDALGLMVQNIAAAVAGLVIAFQANWQLSVIILVLLPILALNGILQMKFLQGFTADGKYIKMVKEFVEKDTCRHMNVEGKYLRFISCPNRRCKFFEWVDEVGARSNVSAAAVEVVGTQNSAKLEAEMWKLDAQERKIERLNVEIERLIVEAKEIDACVGRLCDELNILQEQVGRLDDNMKIQCKMQYMLFIFLLVLIIGMWFARD* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2746 1035 PANTHER - 31 889 - -
Amo06g2746 1035 Gene3D ABC transporter type 1, transmembrane domain 59 888 IPR036640 GO:0005524|GO:0016021
Amo06g2746 1035 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 360 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g2746 1035 SMART AAA_5 422 615 IPR003593 -
Amo06g2746 1035 Pfam ABC transporter transmembrane region 72 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g2746 1035 Pfam ABC transporter transmembrane region 714 885 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g2746 1035 Coils Coil 953 980 - -
Amo06g2746 1035 Pfam ABC transporter 414 562 IPR003439 GO:0005524
Amo06g2746 1035 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 31 889 - -
Amo06g2746 1035 Coils Coil 615 649 - -
Amo06g2746 1035 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 888 - -
Amo06g2746 1035 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524
Amo06g2746 1035 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 395 631 IPR003439 GO:0005524
Amo06g2746 1035 SUPERFAMILY ABC transporter transmembrane region 696 884 IPR036640 GO:0005524|GO:0016021
Amo06g2746 1035 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 886 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g2746 1035 CDD ABC_MTABC3_MDL1_MDL2 395 633 - -
Amo06g2746 1035 SUPERFAMILY ABC transporter transmembrane region 59 379 IPR036640 GO:0005524|GO:0016021
Amo06g2746 1035 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 368 - -
Amo06g2746 1035 Gene3D - 385 634 IPR027417 -
Amo06g2746 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 633 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2746 Amo-Chr6 92051203 92058321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2746 55 922 Calmodulin-binding Proteins AT2G36910 40.844 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2746 K05658 - gmx:100800293 1169.45