Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2741 TCTCTTGTTCTATACCCATCCTTTTCTGGCCCCCAACTTGTTCATCATCACTCCCATCTCATCCCTTCATCTCACTGCTGCTGTGGTGATGTGGCAGCTTGTGTGGTGGTGAAAGTTGGTGGTGCCACACTGGTTATTCACCCCATTCATGATCAAACGATCTATCTGACTGTGGGACATAAGAGGAAGCTAAAGGAGGAGTATGGAATTGAGCCCTGGACTTTCATTCAGAAGTTAGGAGATGCTGTCTTTATTCCAGCGGGATGTCCATACCAAGTTAGAAATCTGAAGACATGCATCAATGTTGCGCTTAGTTTTGTGTCTCCTGAAAGTGTTGGCGAGTGTTTTCGTTTGGCAGAGGAAATCCGCACACTTCCGATAAATCATAGGTCGAGCGAGGACAAGTTGGAGCGTTATTGTGTTAATTATAAAAAAAAATTAATCTTATTTTCATTTAGCTCTAGAAATAGCTTGAATGAAAATCTGAAACCTGAAAGGAATATCCAAGAAAAGCAGCCAACCGGAGAAAAGGATAAATGGGACGAGTATACAACCGGAGTTTTCTTGGACGTATGTGTTGAGGAAATAGCTTCAGGGAATAGAGCTGACGCTGACTTCAATGAAGAGGGATGGATTAATGTGATTGCTAAGTTCAATGGAAAAACAGGTCGTAACTATGACTGCAGGCAATTGAAAGATAAATGGGACATTTTGAAAGGTGACTTTAATTTATTGGAAATTTTGTTCTTGAAGATTGTGAGATTTCTGAAATTTAGGTTTCAATGTCCTTCACACTTGGATAAGTTGGAAGCATGTTTTAAAGATATGAAGGCTATAGGTGATGTAGCTTTGAAAACACATGCAGATCCATCATCAGCTGAGGTGAGGGTATGTGGGAAAGAAAATGAGGATAATCATGAATTAAGGGCTTTTGGTGAGGGTGTTAGGGACAGTGATAGTGTTGCTTATGAAGAACCTCATACTTCATATAGTGTGGGCCACACTAACTTCAAACTAAATGATAAAAAACAATTTGGTAAAGTCAATAAGCTTCAACATTCTGTTAGCGTGCCTTTGGAGGAAGAGGAACATAGCATCCCTCCGGAAGTGACACATAGAAGAGCTACTCAAGAGAATCAGCCCATTCCAGACAATGATAAATGGGATGATTTCACAATAGGAGTTTTCTTGGAAGTATGTGTTCAGGAAATAGCTGCTGGGAATAGGAACTGGACAATCCTAAAAAATGATTTTACTTTATGGACAAAGCTTGTTGAAAATCAAACTGGTTTAGGATGGGATCCTATTAAAAAAACTGTCAAAGCACCTCCCAAATTTTGGGAATCCAGAAAAAAGGAGAACCCTGCATTTCTAAAGTTTGAGCATCAAGGTCCTCCACACTTAGATAAGTTGGAGGCTTGCTTTGAAGATGCTAAAGGTACAAGTTATGTAGCTATATATGCAGATCCATCACCAAATGGGGTGGGGTTTTATGGTGAAGAGAATGAGGATAATCTTGAATTAAGGGCTTCCAATGAGGATGATGGGGACAGTGGTGATGATGTTGCTATTGAAGAAACTCATCATACACAGAATGTGCAGCATAGGGAATATAATGAGAATAATCCTGAATTAAGGGCCTCTGAGGAGGGTTTCAGTTGA 1662 0.4001 SLVLYPSFSGPQLVHHHSHLIPSSHCCCGDVAACVVVKVGGATLVIHPIHDQTIYLTVGHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPYQVRNLKTCINVALSFVSPESVGECFRLAEEIRTLPINHRSSEDKLERYCVNYKKKLILFSFSSRNSLNENLKPERNIQEKQPTGEKDKWDEYTTGVFLDVCVEEIASGNRADADFNEEGWINVIAKFNGKTGRNYDCRQLKDKWDILKGDFNLLEILFLKIVRFLKFRFQCPSHLDKLEACFKDMKAIGDVALKTHADPSSAEVRVCGKENEDNHELRAFGEGVRDSDSVAYEEPHTSYSVGHTNFKLNDKKQFGKVNKLQHSVSVPLEEEEHSIPPEVTHRRATQENQPIPDNDKWDDFTIGVFLEVCVQEIAAGNRNWTILKNDFTLWTKLVENQTGLGWDPIKKTVKAPPKFWESRKKENPAFLKFEHQGPPHLDKLEACFEDAKGTSYVAIYADPSPNGVGFYGEENEDNLELRASNEDDGDSGDDVAIEETHHTQNVQHREYNENNPELRASEEGFS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2741 553 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 141 IPR045109 GO:0032454|GO:0033169
Amo06g2741 553 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 33 141 - -
Amo06g2741 553 ProSiteProfiles JmjC domain profile. 1 123 IPR003347 -
Amo06g2741 553 MobiDBLite consensus disorder prediction 509 553 - -
Amo06g2741 553 Pfam Myb/SANT-like DNA-binding domain 179 248 IPR024752 -
Amo06g2741 553 Pfam JmjC domain, hydroxylase 47 106 IPR003347 -
Amo06g2741 553 SMART cupin_9 1 123 IPR003347 -
Amo06g2741 553 Gene3D Cupin 14 132 - -
Amo06g2741 553 SUPERFAMILY Clavaminate synthase-like 46 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2741 Amo-Chr6 91966291 91974359 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo06g2741 Myb_DNA-bind_3 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2741 K15601 - gmx:100797799 174.481