Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2724 ATGGAGTTTAATCAAAATTTCTTTGAGGATTTCACTTATCTTTCTGGGACTATTTATGAAAATCCATGCATAAAGACAGAGATATCCACCATGGTTCCCATGCAACAAAAATCCCTCCTTGTATATCCTCCATTGAAAAATGAAATTTTATACAAGAACGATTTCCACCATCTTCAATCCTTAAAAGATATTACAAACACATTCTGCTCCATGGCATTTGTACCAAACAAGAACCAAGTGGAGGATATTCATGCTTTTCCAAACAACCACAATAGCTTATGGGATTTATCTCAGAAAAACCAAGTTCAAATTGATGATGCTTTCGTACCATCATTAATTTATGATGCATCTCTATTGGTGCCAATGAATTTCAAGCTCCAGGATGAGCTTTCAACCTTAACTCCAACGGAAAATGCTCACTGGAACAATATTCAAAATCCTTTTCTCAACAACCAAATGCCCCAAAAAAAGGGACTAAGGAGGAAAGGCAACATTCAACAAAGTGTTACCGAAATAATCAAAGGCCAGTGGAGTGCAGATGAGGATATGTTACTAACACAGCTAGTTGAACTCTTTGGGTTTAAAAATTGGACCTACATAGCAACACTAATCAGCGGTAGGATAGGAAAGCAATGTAGAGAGAGATGGTTCAATCATCTTCAGCCGGATATTAAGAAGGACTCCTGGGATGAAGAAGAGGATAAACTACTAATTGAAGCTCACAAGCAAGTTGGAAATAAGTGGGCTGAAATTGCAAGGAGGCTCCCCGGCCGCACTGAGAACACAATTAAGAACCACTGGAACGCCGCTAAGCGAAAGAAGAGTAGCAAGAGACAACCCAGGAAGAAGAAGAACCAGACTTACTTTGGGGAATCATTGCTTGAGCGCTACGTCAAAGAGGTCACTGCAGCTGATGCGGCAAAAAAGCAGCTAAAGAAATCCATGAAACAGTTGAAAATAAAGAATGAGGATTACAACCTGCAGCAGAATGCATGCATCACTGGGTATGGTGGCAATATACCAGTGAAGTTCAGTTCTAATGAAATTGGGAATGGTTCTGTTCTGATTGATGGCACAGAGAACTATGTTCCAATGGAGCTTGATATGATTGGAATTGAGGCCTACATGAACTAG 1134 0.3977 MEFNQNFFEDFTYLSGTIYENPCIKTEISTMVPMQQKSLLVYPPLKNEILYKNDFHHLQSLKDITNTFCSMAFVPNKNQVEDIHAFPNNHNSLWDLSQKNQVQIDDAFVPSLIYDASLLVPMNFKLQDELSTLTPTENAHWNNIQNPFLNNQMPQKKGLRRKGNIQQSVTEIIKGQWSADEDMLLTQLVELFGFKNWTYIATLISGRIGKQCRERWFNHLQPDIKKDSWDEEEDKLLIEAHKQVGNKWAEIARRLPGRTENTIKNHWNAAKRKKSSKRQPRKKKNQTYFGESLLERYVKEVTAADAAKKQLKKSMKQLKIKNEDYNLQQNACITGYGGNIPVKFSSNEIGNGSVLIDGTENYVPMELDMIGIEAYMN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2724 377 Pfam Myb-like DNA-binding domain 174 220 IPR001005 -
Amo06g2724 377 Pfam Myb-like DNA-binding domain 226 268 IPR001005 -
Amo06g2724 377 Gene3D - 228 291 - -
Amo06g2724 377 ProSiteProfiles Myb-like domain profile. 221 271 IPR001005 -
Amo06g2724 377 Gene3D - 173 225 - -
Amo06g2724 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 220 IPR017930 -
Amo06g2724 377 PANTHER MYB DOMAIN PROTEIN 100-RELATED 111 325 - -
Amo06g2724 377 SMART sant 225 273 IPR001005 -
Amo06g2724 377 SMART sant 173 222 IPR001005 -
Amo06g2724 377 SUPERFAMILY Homeodomain-like 172 267 IPR009057 -
Amo06g2724 377 PANTHER MYB PROTEIN-RELATED 111 325 - -
Amo06g2724 377 Coils Coil 294 328 - -
Amo06g2724 377 CDD SANT 228 268 IPR001005 -
Amo06g2724 377 CDD SANT 177 220 IPR001005 -
Amo06g2724 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 275 IPR017930 -
Amo06g2724 377 ProSiteProfiles Myb-like domain profile. 169 220 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2724 Amo-Chr6 91692087 91699663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2724 56 301 MYB Transcription Factor Family AT4G18770 42.570 5.52e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo06g2724 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2724 K09422 - adu:107469217 292.737