Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g2696 | ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAAGAGGAAGATTTGGAACTTTATCTAACTCTCATCGGAGATAAAATAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCCTCAACAACCACAATCACATTATCCAGTGTTAGGAGCCACTGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATAATGCCAGATGTCATATCCTACGCGGAAGCCACAATTCAAACTCGTCCTTCCGGATTCCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTAGAGTTTGTTGATGACTACGGCGACATTATCACCGACTTCATCATTGAAGATTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAAAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATTACGGTGATGATGCAGAACAAGTTTTATCAATGCCTTGTAAGCATCTGTATCATCAAGAATGCATCATCCGCTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCGGATGCCAACTAATTAA | 759 | 0.3966 | MTSPFGFSWEVSSPSLLQEQEEDLELYLTLIGDKIADYFILKVRVRHQTCWTTHPQQPQSHYPVLGATDTFACHSSILMQAQEFLQNGSSHMQLHFPDDVIPNVLIHHIMPDVISYAEATIQTRPSGFLYERPDFRLFSLNLDIIIQNSLEFVDDYGDIITDFIIEDSMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDYGDDAEQVLSMPCKHLYHQECIIRWLKTSHLCPLCRYRMPTN* | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g2696 | 252 | PANTHER | F6A14.12 PROTEIN-RELATED | 101 | 251 | - | - | |
| Amo06g2696 | 252 | SMART | ring_2 | 202 | 245 | IPR001841 | - | |
| Amo06g2696 | 252 | Pfam | Ring finger domain | 201 | 246 | IPR001841 | - | |
| Amo06g2696 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 101 | 251 | - | - | |
| Amo06g2696 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 252 | IPR013083 | - | |
| Amo06g2696 | 252 | SMART | ringv_2 | 201 | 246 | IPR011016 | GO:0008270 | |
| Amo06g2696 | 252 | SUPERFAMILY | RING/U-box | 184 | 250 | - | - | |
| Amo06g2696 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 246 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo06g2696 | Amo-Chr6 | 91245993 | 91246751 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo06g2696 | 173 | 250 | C3H Transcription Factor Family | AT1G18760 | 41.026 | 3.34e-19 | 81.6 |