Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2684 ATGCGACATACGTCCATGGTGGTGTCGCGAGTGCATCACAATATGTCAATGGATACACCAATTTTTGAAGAAGCATTGTACGGCAGTGCGTATGACATGAGGGAGAATTCTAATTCAACCGACATTAATGTTCTGTGTTTGAGTGAAGATGACACACCACATGTAGAACAGGAAAAAGAATCTGAAGACGCTATTCAGAAAAAGGATGATGCTACGGTAAGCAATAATGAGGTCCCGGATCACACTGGAATTCCAATGGAGGAAATTCCGTACGTAGGATTGAGATTTGATTCGTTACAGCAGGCACAAGAGTTCTATTCTAATTATGCGAAGAAGGTTGGGTTTGTGACGAGGATTAGGAATACAAACTTTGATAAGACTAGGAAGGAATTAAAGGCAGCAATGCGGGTAAAGAGAATAACAACAGCTGGGTGCAAAGTAAGGATGTACGTGATGCTTGATAGGCATAATGATAATTGGTTGGTGACCAAATTAGAATTGAAGCACACCCACGCGTGTTCTGCCGAGCAAGTTGTGCATTACAGTGAGTACAGGGAACTGACCATGCATGCCAAGTGCAATGTTTTTCCAAATACTAGACACCGATGGTACCTTTATGAAGATCGTCGAATGTGGGTTCCAATATATTTCCAAGGTGAATTTTGGAGTATGCACGCCTTTTTCGGTGGTTACCTGCATTGTAAAAGTGGACTGGTTCAGTTCGTGCATGAGTATGACAATGTGCTTGGAAACAAAGAGCAAAAAGAACTGGAGGATGATGCTGCGAACTCTAAAGGAGTTCAATTCAGTAAAAGAGGGGATTGTTTAGTCCGTGGGGTCACTCAAGAGGGTGATTTGTTTCGGGTGACCGTGAACGAGCAATACCTATTGTATGGGGAGCCTAGATCTTGGAAGTACAGTGTTGAGTTTGATCCCAAGACACACAAGATTCGGTGTGAATGCAACATGTTTGGCTCAAGAGGTATTATTTGTTGCCATTGTCTTGCTGTGTTGTTTTATTACGGAGTAGACACAGTACCATCTTTCTATGTTATCCCTCGATGGAGCAAGAATGTACAGCGAAAACACACTTTCATCAAGAGCAGCCATGACGAGAAATCAAAGTTGCTTGATTGTCGTGCGAACTTGGTGTCTAGGCGTGTTCCAACTTCACAAAACATCACGGTTTCAACGAAGGGTTGGCCAAGAATGAAGAGGCTTGGATCTGAACTCGACGCCTCAATCAAGAACTCTATGCGAAGAAAGAAGAAGAATCCACCGCTGGATGTTCATCAAGCATTGAATCAAGATGTAGTGTATTGTTCTGCTAGGAGAGCGAATGGATCACAGGAACATGGCGGGTTCTTGTCGTTGTTAAACTCATTTCAGCCTACTTAA 1398 0.4292 MRHTSMVVSRVHHNMSMDTPIFEEALYGSAYDMRENSNSTDINVLCLSEDDTPHVEQEKESEDAIQKKDDATVSNNEVPDHTGIPMEEIPYVGLRFDSLQQAQEFYSNYAKKVGFVTRIRNTNFDKTRKELKAAMRVKRITTAGCKVRMYVMLDRHNDNWLVTKLELKHTHACSAEQVVHYSEYRELTMHAKCNVFPNTRHRWYLYEDRRMWVPIYFQGEFWSMHAFFGGYLHCKSGLVQFVHEYDNVLGNKEQKELEDDAANSKGVQFSKRGDCLVRGVTQEGDLFRVTVNEQYLLYGEPRSWKYSVEFDPKTHKIRCECNMFGSRGIICCHCLAVLFYYGVDTVPSFYVIPRWSKNVQRKHTFIKSSHDEKSKLLDCRANLVSRRVPTSQNITVSTKGWPRMKRLGSELDASIKNSMRRKKKNPPLDVHQALNQDVVYCSARRANGSQEHGGFLSLLNSFQPT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2684 465 MobiDBLite consensus disorder prediction 52 84 - -
Amo06g2684 465 PANTHER OS01G0607050 PROTEIN 201 374 - -
Amo06g2684 465 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 201 374 IPR031052 GO:0006355
Amo06g2684 465 PANTHER OS01G0607050 PROTEIN 88 176 - -
Amo06g2684 465 ProSiteProfiles Zinc finger SWIM-type profile. 306 342 IPR007527 GO:0008270
Amo06g2684 465 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 88 176 IPR031052 GO:0006355
Amo06g2684 465 MobiDBLite consensus disorder prediction 52 75 - -
Amo06g2684 465 Pfam SWIM zinc finger 316 341 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2684 Amo-Chr6 90844339 90849099 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo06g2684 SWIM 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2684 - K17604 aip:110263722 420.624