Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2645 ATGCTTCATGTTTTCATTGTTCTGTTCTTACGAAGAAAAAAAAACTTTGTTTTCATTGTTTTGTTCATTGTTTGGTTGCACTGTCCCTGCTCTCGACCGCTGACTTGCTGCCTCTCCTCTGTGTTGGATGTTTTTTTGTTTCAGGCTCTATTGTGTGTTTGTTGTGCAACACTATCATTTTTTGTTTTACTTTTTGACTCGGCTACATTAAGCTGTTCTGATATAACAAGAACAACAGTGACATGTTTTGCACCTGACAACCAACTTAGGAACTCATTCTTGACAACTTTGCGAGTCACCAAGAGAGGGCAAGAAACAATGGCAGCAATGATGCAAGGAGTGCAGAAGAACACACTATATGTGGGTGGTTTAGCTGAGGAAGTTAACGAGTCCATACTTCATGCAGCCTTCATACCCTTCGGGGACATTAAGGATGTTAAGACCCCACTTGACCAGGCAACGCAGAAGCACAGGTCGTTTGGCTTTGTTACATTTCTTGAGAGGGAGGACGCTGCTGCCGCCATGGACAACATGGATGGCGCTGAACTCTACGGCCGTGTACTCACTGTTAACTATGCCCTCCCTGAGAAAATCAAGGGTGGTGAGCAGGGCTGGGCCGCTCAACCAATTTGGGCTGATGCTGACACCTGGTTTGAGCGGCAACAACAAGAAGAAGAGATGCGTCGTCTTGAGGCAGAGAGTCGAGCTGCAAATCAGGCAGCAGAAGACCTGCGCAGGAAAAAAGCTGCCGAAGAGCGGGAAGGAGAAAAAGAAGACGAAATTGATCCCATGGCAAAGGCCGAAGCAGAGGCTCTGCAACAGAATAACTAG 831 0.4657 MLHVFIVLFLRRKKNFVFIVLFIVWLHCPCSRPLTCCLSSVLDVFLFQALLCVCCATLSFFVLLFDSATLSCSDITRTTVTCFAPDNQLRNSFLTTLRVTKRGQETMAAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAESRAANQAAEDLRRKKAAEEREGEKEDEIDPMAKAEAEALQQNN* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2645 276 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 112 275 - -
Amo06g2645 276 SMART rrm1_1 118 191 IPR000504 GO:0003723
Amo06g2645 276 MobiDBLite consensus disorder prediction 223 276 - -
Amo06g2645 276 Coils Coil 220 254 - -
Amo06g2645 276 MobiDBLite consensus disorder prediction 223 266 - -
Amo06g2645 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Amo06g2645 276 SUPERFAMILY RNA-binding domain, RBD 114 204 IPR035979 GO:0003676
Amo06g2645 276 Gene3D - 98 256 IPR012677 -
Amo06g2645 276 PANTHER TRANSFORMER-2-RELATED 112 275 - -
Amo06g2645 276 CDD RRM_PPIE 119 191 IPR034168 GO:0003723
Amo06g2645 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2645 Amo-Chr6 90090444 90094688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2645 110 195 Eukaryotic Initiation Factors Gene Family AT3G11400 36.047 2.81e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2645 - - ccaj:109797476 274.248