Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2615 ATGGGAAGAAGTTGTTCTTCCATATCACTCTTCCTTGCCTTGAAGTTATTACTACTACTAGTAGCATGGTCATCAAAAAGGGGACACTGCTTAACTACCCCACGACCAAGGACCACTAATAAGAGCATAGGTGCAGTGCTTGATCTGGATTCACTAATGGGTAAGCAGCAGAAGATAGCCATGAAAATTGCCATCAGAGATTTCAACAGATTCAGTAGAACTAAACTCCAGTTGGAGGTGGGAAATTCCCGCGGGAATTCGGCTCAAACAGTTGTTAACGCCATGGATCTTGCACAGAAGAAGCAGTTGCTAGCCATCGTAGGAACAATAACACAGAGCGAAGCATCTTTGGCAACTGAAATTAATAACGCCACAAAAAACACCCCTATATTATCTCTATCTTCGTTTGCACCCATCACAGAGTTACCCTCTTCTCCATTCCCACAACTAATCCAACTCGGAGATGATATCAACATTCAGATGCAATGCCTTGCAGCCATTGTAGGACACTTCAAGTGGAAAAAAGTGACAACAATATATGAAGTTAATAGCAGGTTTTCTTATGATCCAGGTGTACTAATTTCCCTCTCCAATTCTCTTCGCCATGTTGGATCTGAGATCGTTAACCAGTTAGCATTTCCTTCCTTGTCTTTGCAATCTAGAATCGAAAATGAGCTTAACCAACTCAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGTTGGCTAGCGTGCTTTGCAAGAAAGCAAAACAAATGGGTTTGATGGAGAAAGGATATGTATGGATCATCCCCAACGAGGTTGCTTCCCTTCTTGATTCGGTTAACTCTTCAGTTATCTCTACCATGCAAGGTGTTATTGGATTCAAAACACATTTTTTGGAAACTACCAAACCATATAGAAAGTTCGGGTTCAGATTTCGTAGAAGGTTTGCTCAAGAGTACCCTGAAGAAGAAGAGAACAACACTCCAAGTGTTTTCGCACTTCGAGCTTATGATGCAGCTATTGCTATTGCTAAGGTTACAAACAAGTCACAAGGAAAGTTCAACATGAAAGAATTCCTTGATGAAAATTTACATCAATCTTCAACCTTCACCATAATTAATGTGATAGGAAAAAGCTATAGAGAAATGGCATTTTGGTCTCCAACACATGGTTTTTCCAAGAACTTTGTTGAACATGAGAAAATGGAGGTAAATAAATCTAACGGTTATGGTGGAGTTGTTTTGAGTAATATTTATTGGCCTGGAGATTTACACTCAGTTCCAAGGGGATGGACAAATAGTAATGAGGAAATGCCACTTAAAATAGGAGTACCTGCAAATGATGCCTTTGCTCAGTTTGTGAATGTCACCTATGGTGACAGCAAGCATGCAACTTCCATAACTGGTTTTTCAATCAATGTCTTCAAAGCAGCTATTAAGAATCTTCCATATCACTTGCACTATGATTTTGTTCCCTTCAATGGCTCCTATGATGAAATGGTTAATCAAGTTAACAATAAGACATTAGATGCTGCAGTTGGAGATATATCAATATTGGCATATAGATATCATTTAGTTGAGTTCTCACAACCATATGTTGACTCTGGACTTAACATGGTGGTCGTTGAGAAGCCAAATAAATCAAAACAAACATGGATGTTTATGGATGCATTCACAAAAGAGATGTGGTTGATGATGGCAGCAGTGCACGTTTTGGTTGGATTTGTCATTTGGTTGATTGAACGCGAAGAAAATGAAGAACTACAAGGTCTGGGGGCGATGCTTTGGTTTTTAGTCACCGTAATATTCCTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAACCAGTAGCTTCACAGCGAGTCTAACATCGATGATGACCGTATCGCAACTTGAACCATCAGTGGTTGATATTCAGACCCTTCAGAAGAGAAATGCTCCAGTTGGTTGTGATGAGAATTCATTTATTGTGAGGTATTTGATTGACATACTAAAATTCAAACCTGAGAACATTAGAAGAATAAATTCCATTAATGGTTACCCTGCAGCATTTAAGAATAATGAGATTGAAGCAGCTTTCTTTGTCGCCCCTCATGCCAAAGTCTTTCTCGCAAAGTACTCATGTGAAGGCTTCGTCCAAGCAGGGAGCACCTTTAGGCTTGGTGGCTTTGGTTTTGTGTTTCAAAGGGGCTCCTCTTTGGCTAGGGATATATCCGAGGCATTGCTAAGTGTTATAGAGAATGGAGAAACAGAGCAACTTGAAAAGGATATGCTGTCCAATTCACATTGCTCTCTTTCAGATAAAAAAGCAAAAGAAAGTTCACCATTAGGTTATCAGCCTTTCCTTGGCCTATTTTGCATTTGTGGCAGTATTGCTATTTTGGCACTATTGTATATCATGCTTTGTTTAACTTTAAAGAATGTTGAGAACTTGGTAAAATACATGAGAGGTGCATTGATTCAGTTATGGAGAATAAGGAGATGGATAACAACACATTGTGTTGGGATCTATTCTAAAGTACAGTCAAGGAGCATGAGAGGGGTTAATGTTGCCATAGAAGCAAGAAATTCAGCGGAAATAGTCATTGATAGTGAGCAAGTCCCTCGTGTAGCTGAAGTTGTTTGA 2667 0.3952 MGRSCSSISLFLALKLLLLLVAWSSKRGHCLTTPRPRTTNKSIGAVLDLDSLMGKQQKIAMKIAIRDFNRFSRTKLQLEVGNSRGNSAQTVVNAMDLAQKKQLLAIVGTITQSEASLATEINNATKNTPILSLSSFAPITELPSSPFPQLIQLGDDINIQMQCLAAIVGHFKWKKVTTIYEVNSRFSYDPGVLISLSNSLRHVGSEIVNQLAFPSLSLQSRIENELNQLKKKSNRVFLIVHSSLELASVLCKKAKQMGLMEKGYVWIIPNEVASLLDSVNSSVISTMQGVIGFKTHFLETTKPYRKFGFRFRRRFAQEYPEEEENNTPSVFALRAYDAAIAIAKVTNKSQGKFNMKEFLDENLHQSSTFTIINVIGKSYREMAFWSPTHGFSKNFVEHEKMEVNKSNGYGGVVLSNIYWPGDLHSVPRGWTNSNEEMPLKIGVPANDAFAQFVNVTYGDSKHATSITGFSINVFKAAIKNLPYHLHYDFVPFNGSYDEMVNQVNNKTLDAAVGDISILAYRYHLVEFSQPYVDSGLNMVVVEKPNKSKQTWMFMDAFTKEMWLMMAAVHVLVGFVIWLIEREENEELQGLGAMLWFLVTVIFLAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMMTVSQLEPSVVDIQTLQKRNAPVGCDENSFIVRYLIDILKFKPENIRRINSINGYPAAFKNNEIEAAFFVAPHAKVFLAKYSCEGFVQAGSTFRLGGFGFVFQRGSSLARDISEALLSVIENGETEQLEKDMLSNSHCSLSDKKAKESSPLGYQPFLGLFCICGSIAILALLYIMLCLTLKNVENLVKYMRGALIQLWRIRRWITTHCVGIYSKVQSRSMRGVNVAIEARNSAEIVIDSEQVPRVAEVV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2615 888 Gene3D - 41 151 - -
Amo06g2615 888 Gene3D - 330 441 - -
Amo06g2615 888 SMART GluR_14 440 774 IPR001320 GO:0015276|GO:0016020
Amo06g2615 888 Pfam Ligand-gated ion channel 770 803 IPR001320 GO:0015276|GO:0016020
Amo06g2615 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 826 - -
Amo06g2615 888 CDD GluR_Plant 438 772 - -
Amo06g2615 888 SUPERFAMILY Periplasmic binding protein-like II 415 769 - -
Amo06g2615 888 Pfam Receptor family ligand binding region 58 350 IPR001828 -
Amo06g2615 888 PIRSF IGluLR_plant 4 360 IPR017103 -
Amo06g2615 888 PIRSF IGluLR_plant 345 838 IPR017103 -
Amo06g2615 888 Gene3D - 551 676 - -
Amo06g2615 888 Gene3D - 535 547 - -
Amo06g2615 888 SUPERFAMILY Periplasmic binding protein-like I 43 430 IPR028082 -
Amo06g2615 888 Gene3D - 156 327 - -
Amo06g2615 888 Gene3D - 464 534 - -
Amo06g2615 888 PANTHER GLUTAMATE RECEPTOR 39 826 - -
Amo06g2615 888 Pfam Bacterial extracellular solute-binding proteins, family 3 463 769 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2615 Amo-Chr6 89626064 89633020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2615 43 838 Ion Channels AT2G29110 30.572 2.05e-120 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2615 - - aip:107605043 1676.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3161 16 135721147 135724222 Amo06g2615 06 89626064 89633020 hybridization