Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2598 ATGATGATCATTACCTTCTTACACATGAAAGCATTGATCTGTTTCTTCTTCTTTGTGTTTGTCCCCACATCGGGGAATGACCTCTTAAGCTGTGAGACAACTTCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATAAAAGCTCTATTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTTTTCTTCTCTCTCAAACCTCACTCATTACTTGGGACTTAACCGTTTTCTGATAGCAAAATCAAATGGTTTCTCTCCAGAAAACACTGAAATCCTCTCCAATGATCAACCCCTTTTGATACCAATTGATTGCAAGTGCAGCAAACATGGTTTTTTCTATGCTGAATTAACCAAAACCACCATCAAAGGTGAGAGCTTCCATGGCATTGCTGAATCACTTGAAGGCTTAACTACCTGCAAGGCCATAAAAGATCGAAACCCCGGCGTGTCGCCTTCGAATCTCAACGGAGAATTCAAGTTGCTGATTCCATTAAGATGTGCATGCCCAGTTTCATCTTCTCAAGAACAGAGGGCTCTGCTTTCTTATCCTGTAAGTAAAGGCGACACGGTTTCGAATTTGGCTTCAAAGTTTAATGTTACCATAGAATCCATAATTTCTACAAATAATTTATCATCATCAGAAGGGTTTGAAACTCAAAGCCTTACACCTTTTACATGCCTTCTGATTCCATTGTTAAATGATAATCCTTCCACAAAAGAAAAAAAAATGTGGAGAACTGAGTTGTGTATTGGCCTAGCCGGTGTTGCACTTGGACTCTTCATTGCTTCGTTAGTGGGATTCTTTTTCATCAGATTGAAGAACAAGAAGCAGAGTGTGAAGAACAATAATAAGTGTAAAGAGTTAGATATGGAGCTTCAACATCTGAATCTCAGTGTAAGAACAACCAGTGACAAAAAAGTCTCATTCGAGGTACCTCACGAGGGGAAGATCCTAGAAGCTGCGACGCCTCGAAAGATTTTCCTTGAGACATACACAAGGGAGGAAATTCGGAACGCAACAGAAGACTTCAGCTCAAGCAATCACATTGAGGGGCCGGTGTTCCATGGCCGATTGAACGGCAAGAACATAGCAATAAAAAGAACAACGAACGATGTGGTTTCGAAGATAGAGTTCGGCCTCTTCCACCACTCAGTTCAACGTCACCCCAACATTCTAATGCTTCTTGGAACAACAAGCTTGCTAGAGGGTCCAGATTCCTACCTGGTTTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGCTTGGCAATCAAGAATCAGTTCATTGCTTCATGCTATTGTTTCTTGACGTGGAGGCAGAGGCTCCGGATCTGCCTCGACATAGCCGGCGCCTTGCAGTACATGCACCATGTGATGATCCCAAGCTATGTTCATAGGAACATAAAGAGTAGGAACATTTTCTTGGATGAAGAGTTTGGTGCAAAACTTGGGAATTTCGGTATGGCAATGTGTGCTGAGAATGAAACTGAAGATCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGTTATTTGGCACCTGAATTTGTTCATCAAGGTGTAGTTTCACCAAGCATTGATGTGTTTGCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCCGGCCAGACACCCATAAGCAGGCCTAACGACAAGGGTGAAGGGAGTGTTTGGCTCACGGATAAAATCCGGTCGATTTTGGCGTCGGAGAAGAATGCAAGTGAGCTGAGGGAGTGGATTGATAGTGCCTTAGGGGAGAACTATTCGTTCGATGCAGCTTTCGAATTGGCTAACATTGCAAGGGCTTGTGTTGAAGATGTGGCTTCTTTGAGACCAAGTGCAAATGAAATTGTTGACAAGATTTCAAGATTGGTGGAGGAGTTTCCGGATGATGAACACCACATTTGGATCGGATTTGGATCTTTCTTTCCATTGTGTAATTACTATAGCAAATCAGAATAA 1989 0.4253 MMIITFLHMKALICFFFFVFVPTSGNDLLSCETTSPDASGYSCIQNNKSSIQCATFALIHTNPYFSSLSNLTHYLGLNRFLIAKSNGFSPENTEILSNDQPLLIPIDCKCSKHGFFYAELTKTTIKGESFHGIAESLEGLTTCKAIKDRNPGVSPSNLNGEFKLLIPLRCACPVSSSQEQRALLSYPVSKGDTVSNLASKFNVTIESIISTNNLSSSEGFETQSLTPFTCLLIPLLNDNPSTKEKKMWRTELCIGLAGVALGLFIASLVGFFFIRLKNKKQSVKNNNKCKELDMELQHLNLSVRTTSDKKVSFEVPHEGKILEAATPRKIFLETYTREEIRNATEDFSSSNHIEGPVFHGRLNGKNIAIKRTTNDVVSKIEFGLFHHSVQRHPNILMLLGTTSLLEGPDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDIAGALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKLGNFGMAMCAENETEDPHFYSTNPASWSLGYLAPEFVHQGVVSPSIDVFAYGVVLLEVLSGQTPISRPNDKGEGSVWLTDKIRSILASEKNASELREWIDSALGENYSFDAAFELANIARACVEDVASLRPSANEIVDKISRLVEEFPDDEHHIWIGFGSFFPLCNYYSKSE* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2598 662 Pfam Protein kinase domain 362 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2598 662 SUPERFAMILY LysM domain 185 217 IPR036779 -
Amo06g2598 662 CDD LysM 185 217 IPR018392 -
Amo06g2598 662 ProSiteProfiles Protein kinase domain profile. 343 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2598 662 Gene3D Phosphorylase Kinase; domain 1 322 416 - -
Amo06g2598 662 ProSiteProfiles LysM domain profile. 184 233 IPR018392 -
Amo06g2598 662 ProSiteProfiles LysM domain profile. 120 166 IPR018392 -
Amo06g2598 662 Gene3D Transferase(Phosphotransferase) domain 1 417 644 - -
Amo06g2598 662 Pfam LysM domain 186 218 IPR018392 -
Amo06g2598 662 Gene3D LysM domain 173 246 IPR036779 -
Amo06g2598 662 SUPERFAMILY Protein kinase-like (PK-like) 331 628 IPR011009 -
Amo06g2598 662 PANTHER PROTEIN LYK2 7 656 - -
Amo06g2598 662 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 656 - -
Amo06g2598 662 SMART LysM_2 121 167 IPR018392 -
Amo06g2598 662 SMART LysM_2 185 234 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2598 Amo-Chr6 89366917 89369343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2598 40 634 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.514 1.62e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo06g2598 Pkinase 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2598 - - gmx:100816082 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3180 16 135991940 135994310 Amo06g2598 06 89366917 89369343 hybridization