Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2582 ATGCCTCCTCCATTTGATATGATTTCCAAGATGCATCCTCCTAGAGAGGCTTGGAGGCCGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGCTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTAAAGCTACAGTTAAGAAACCAGTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAAAATGGCATACTTTACTGTTGTGTCAAATCATGATAGTTATAGAGAAACTTCTCATGAATTCAAATTGGTTTTTCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTTAACATGTTACCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGTGCGATGTGCATTATTTGGGGACTATATTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAACCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGTGTCAATGGTACCAGCCACTCTTTATTGCAAATGATGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCATTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAATGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCACTTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGAGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGAAACATTTTATGGCACTTTTCGAGTTAGGAGAATATATGATGATCCCACCATTATTTCCATGTTTGAACTTCCTGATTATGATGTCGATGACGAGTCTACTCCAAAAAAGGAGCCTGATTTTCACAAATCTGTTCCCTGTGGAGAAGGAGATATTGGTATTAAGAAGGAGTCATCCAATACTTTTATAAAAAGTGAGAAACCTGCTGTTTCTGGAGGGACTGAGTTTGCTGCCTTAATTAATGGTGAAGATGGAAAAGATGAGAAAACACCCAACAATGATACTGTTAGTGATTATCTTTCTGTTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAAGTGCTGAGGTGTTGTCCCACGTTTTTGATGCACCTCCCTTATTTGAAGAGGCAGTTGCTGATGCAGATGGGCGTGGGTTCAAGGTTGCCAAGGTTAATGGAGTTTGATTTAAGGTGTGGAATTGAGCTGCTGTGTCTAGTGTAG 1512 0.3829 MPPPFDMISKMHPPREAWRPKVRVLRLWVVPSFGNHEAPNSMEMILLDEHCGKIKATVKKPVLNRFRDHIVEGQVYKMAYFTVVSNHDSYRETSHEFKLVFLHRTTVVAVDEDVIPKTCFNMLPFSELLNMTQDYDFLVVRCALFGDYINQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVEFRCQWYQPLFIANDGKVVSLEDDFMHLTRKCTIEELQDNNEGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHNGEGIFLLFDREASYLLKKSCADLFTEVQRDALLVCGDTYPPIFQELIGKKLLLKVDTKGVPHETFYGTFRVRRIYDDPTIISMFELPDYDVDDESTPKKEPDFHKSVPCGEGDIGIKKESSNTFIKSEKPAVSGGTEFAALINGEDGKDEKTPNNDTVSDYLSVELDILLSSPEKETQVLRCCPTFLMHLPYLKRQLLMQMGVGSRLPRLMEFDLRCGIELLCLV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2582 503 CDD RPA1_DBD_A_like 21 107 - -
Amo06g2582 503 Gene3D - 137 211 IPR012340 -
Amo06g2582 503 CDD RPA1_DBD_B_like 139 204 - -
Amo06g2582 503 Gene3D - 4 112 IPR012340 -
Amo06g2582 503 SUPERFAMILY Nucleic acid-binding proteins 139 208 IPR012340 -
Amo06g2582 503 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 302 - -
Amo06g2582 503 PANTHER REPLICATION FACTOR A 1, RFA1 22 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo06g2582 503 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo06g2582 503 CDD RPA1_DBD_C 232 350 IPR013955 -
Amo06g2582 503 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Amo06g2582 503 Gene3D - 217 354 IPR012340 -
Amo06g2582 503 SUPERFAMILY Nucleic acid-binding proteins 229 336 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2582 Amo-Chr6 89090684 89093530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2582 2 302 Core DNA Replication Machinery Family AT5G45400 18.653 5.65e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2582 - - adu:107471135 669.463