Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2580 CAAGGATCACTCGCTCGCACTCGTCTTCTCCAGATTCAGAAAGCCAAGTACCCAGAGCTCGGAACTCTTCTCTTGAGGACTGGATTTTGTGGCTATGGTTCCCGCTGCCGTTTCAACTATCCCCATGACCATGCCGCGGAAGCTTGGAGTATTGAGGCTAAGATCTTGACTATTTGGGAAGATGCTAGCATTGTTGATGAAAATATGCAGAAACTCTTACATATGGTCTTGATGGATAAGCAGAAATGCTCAGATGATTTTTTTCTCTTTTTTAATTTTCAACACCACAAAGTCCAAGCAACTGTTGAGGATGATTTGATCACAACTTTTATTCATCAGTTAAAAGAAGGAGATGTATTCATTATTTCTGACTTCAAAGTGATACCTAATGGTGGATTGGTCAGGGTTACAAGACATCAGTACCGCATCCTTTTCAAGTGTAGTACCTCTGTTGTTGCAGCTGCAAGTAAAGTCATACCTAATCCTGGTTTAAGTCTAACTTCTATGGACGAGAGCGCACTGATTATGAACATCAATAATTTGAAAAAGTATCAGAGACCACCCATTCTTATGTTGCAATCTTTCAAGATCAAAGTCAATAGAGATAAAGTCAGTCTCCAAAATATGATCAATATTTCTCGGGTTTCAATCAACCCTGATATGTAG 666 0.3964 QGSLARTRLLQIQKAKYPELGTLLLRTGFCGYGSRCRFNYPHDHAAEAWSIEAKILTIWEDASIVDENMQKLLHMVLMDKQKCSDDFFLFFNFQHHKVQATVEDDLITTFIHQLKEGDVFIISDFKVIPNGGLVRVTRHQYRILFKCSTSVVAAASKVIPNPGLSLTSMDESALIMNINNLKKYQRPPILMLQSFKIKVNRDKVSLQNMINISRVSINPDM* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2580 221 Pfam Domain of unknown function DUF223 96 167 IPR003871 -
Amo06g2580 221 CDD RPA1_DBD_A_like 50 151 - -
Amo06g2580 221 Gene3D - 43 155 IPR012340 -
Amo06g2580 221 SUPERFAMILY Nucleic acid-binding proteins 73 152 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2580 Amo-Chr6 89073042 89075891 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo06g2580 DUF223 1.8e-09 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2580 - - aip:107621285 202.986