Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2569 CAGAACAGCACTGACGAAGCACAGGTTCGAATGCACAGTCTCTTCCCATTACCAACAAAAACCCCAGGCTACAATTTCCCGCTCACTCTACCGACTGTCGCTTTCTTTGTCTCTCTGTCGATTGAAAATGGGAAACCGATGCTGAGGCTCAATACTCTCCACAGTTCTGCTTCAGCTCAAGCTTCTTCCTCTTCCTCTCTGCAATGGCTAGGTTTAGAAGGGGAAGGGAAAGAAGTGAAAGGTTTGAAGAGTAAAAGGAGCTGGCTTATTGACATAGGTGGATTTGCAAAGAAAGTGAAAAGCACTAATTTATCTCCAGCTGATCAAATCAAAGATTGTGGGGCATATCGTGATTGTCCAAACTGCCATTACCGTATTGATAACCGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTGAAGTTTGATCCTTCTGATGTAGAACTCCTAGAACATTTAGCAGGAAAATGTGGCATTGGAAATGCTCAGCTGCATATGTTTATTAATGAGTTCATTCCAACAATAGAAGAAGAAGAAGGTATTTGCTATACACATCCAGAAAATCTTCCAGGTGTCAAGAAAGATGGGAGCAGTGCCCATTTCTTTCACAGAACAACCAATGCCTATACTACTGGTCAACGGAAGCGTCGAAAGATTCATCATGAATGTTTGACTGAAGAGCATGTACGGTGGCATAAGACTGGTAAGACAAAAGCTATATTGGAGGATGGAGTGCATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGACCTAAGAAAGGGTCCAAACCTGATAAAACGAATTGGGTGATGCACCAATACCATTTAGGAACTGATGAAGAGGAGAAGAACGGTGAATATGTGGTTTCAAAGATTTTTCAGAAGCAAACTGAGAAAAATGAGGAGAATCCAGGGGTCGAAGATTCTGACCAGACTGAGAAAAATGAGAATCGATTGGCTGATGATTCCAACTGTATAGCATCCCGAACCAGTCCTAGAACTCCGAAACCAAATCCCCCAAATCCACCTCGAGCTGGAAATTTTGTTGACAATGATGATAATATTGACGAAACTGAACTTCCATTCACTCAGGATGTGAAATGTGTCCCACTATGTGATGTTCTGGATCAGAACAGTGCTGGTGACCCTGCATGGCTGGCAGGTGAATCGCAGGCTGTGGAAAACTTCGACTTTGATGGCTTGGATGACATCTTGTTCTGCAATGAAATATTTGATTCATCATCTCTACTAGATRTTTCTGGAACGGAAACCATGATAAATGGATCTGCTTCAAACGATATGCTTGGGAATGATRGTTTATCATACGGAACTTCCGTTCTTGATACCCTTGACTTGGGTACTCCCCCAGATTTTGATCTTTCAAATCTGAATTTTTACTCTCAAGATAGTATTTTCGACTGGGTCGACAGATTATGA 1446 0.4191 QNSTDEAQVRMHSLFPLPTKTPGYNFPLTLPTVAFFVSLSIENGKPMLRLNTLHSSASAQASSSSSLQWLGLEGEGKEVKGLKSKRSWLIDIGGFAKKVKSTNLSPADQIKDCGAYRDCPNCHYRIDNRDVSTEWPGFPLGVKFDPSDVELLEHLAGKCGIGNAQLHMFINEFIPTIEEEEGICYTHPENLPGVKKDGSSAHFFHRTTNAYTTGQRKRRKIHHECLTEEHVRWHKTGKTKAILEDGVHKGFKKIMVLYIRPKKGSKPDKTNWVMHQYHLGTDEEEKNGEYVVSKIFQKQTEKNEENPGVEDSDQTEKNENRLADDSNCIASRTSPRTPKPNPPNPPRAGNFVDNDDNIDETELPFTQDVKCVPLCDVLDQNSAGDPAWLAGESQAVENFDFDGLDDILFCNEIFDSSSLLDXSGTETMINGSASNDMLGNDXLSYGTSVLDTLDLGTPPDFDLSNLNFYSQDSIFDWVDRL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2569 481 MobiDBLite consensus disorder prediction 298 323 - -
Amo06g2569 481 MobiDBLite consensus disorder prediction 297 362 - -
Amo06g2569 481 ProSiteProfiles NAC domain profile. 138 298 IPR003441 GO:0003677|GO:0006355
Amo06g2569 481 SUPERFAMILY NAC domain 123 298 IPR036093 GO:0003677|GO:0006355
Amo06g2569 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 85 479 IPR044799 GO:0003700
Amo06g2569 481 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 85 479 - -
Amo06g2569 481 Gene3D NAC domain 148 303 IPR036093 GO:0003677|GO:0006355
Amo06g2569 481 Pfam No apical meristem (NAM) protein 139 279 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2569 Amo-Chr6 88974756 88978517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2569 116 296 NAC Transcription Factor Family AT4G28500 56.831 7.42e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo06g2569 NAM 3.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2569 - - gmx:100794879 530.406