Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2555 ATGTGGAAATTCACAGAACCTATAAACCAAGCTGAATTTTCATCTCAGAGGGAAGCAACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGGTAGCAACAAAACCCGAATTACAAAGCAATTCGGTGCCTGAGTCCGGTTCTTTCAACTATGCTAACACGTCTCAGTCCATTAAAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGTGAGAATCCAMGGAGCTATTACAAGTGCACRCATCCGAATTGCGCAATGAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACAAATTACTGAGATAGTGTATAAGGGAACTCATAATCATCCTAAGCCACAGAGTACTAGAAGAAGTTCAAGCTCTCAACAAATTATTCATCAGCAGCCTTCTTCATCCTGCACTAACTCAGGAATCTCGGATCAGTCAGTGGTGACACTAGGCAATCCTCAAYTTGATCGTGTGTCGATGCAAGAAGATTCTTCAGCTTCTATGGGAGAGGAAGAATTTGAACAAACTTCTCCAACAAGTTACTCTGGTGGAGATGCAGATGAACTTGGACCAGATGCCAAAAGATGGAAGGGGGAGAATGAACATGATGGTCATTCAGCCTATGGAAGTAGAACTGTTAGGGAACCTAGAGTTGTAGTTCAAACTACAAGCGAGATCGATATTCTTGATGATGGCTACAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAATGCAAGGAGTTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGGAAACATGTTGAGCGAGCCGCGACTGATATAAAATCAGTGATCACAACTTATGAAGGGAAACACAACCATGAYGTGCCTGCAGCACGCGGCAGCGCAGGTTACAACATGAACAGAAACTCTCTAAATAGAAACAATAGCAATGCACCGGCRGCACCAATAAGGCCTGCGGCCGTGAATGGTTATTCTAGCGCGCCRAATTTCACRAATTCACTTTACAATCCTAGGCTTCCGGCCACCGGAACTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGACTTTTYGGCTACACGTCTCTTGGAAGATCAATGGGTTCATATGGAAACAATTCGCAACTYTCGGATGGTGTATACATCAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTGAGTCATTTCTTTCRAAGAACTAA 1239 0.4278 MWKFTEPINQAEFSSQREATKSEYPSTQSFSSEMVATKPELQSNSVPESGSFNYANTSQSIKEQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGTHNHPKPQSTRRSSSSQQIIHQQPSSSCTNSGISDQSVVTLGNPQXDRVSMQEDSSASMGEEEFEQTSPTSYSGGDADELGPDAKRWKGENEHDGHSAYGSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAATDIKSVITTYEGKHNHDVPAARGSAGYNMNRNSLNRNNSNAPAAPIRPAAVNGYSSAPNFTNSLYNPRLPATGTQESSSLDMLQGSGLFGYTSLGRSMGSYGNNSQLSDGVYIKAKDERKDDSFLESFLSKN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2555 412 MobiDBLite consensus disorder prediction 8 61 - -
Amo06g2555 412 MobiDBLite consensus disorder prediction 1 89 - -
Amo06g2555 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 158 IPR044810 GO:0003700
Amo06g2555 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 174 410 IPR044810 GO:0003700
Amo06g2555 412 MobiDBLite consensus disorder prediction 295 332 - -
Amo06g2555 412 MobiDBLite consensus disorder prediction 198 219 - -
Amo06g2555 412 SUPERFAMILY WRKY DNA-binding domain 231 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 MobiDBLite consensus disorder prediction 113 219 - -
Amo06g2555 412 ProSiteProfiles WRKY domain profile. 62 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 MobiDBLite consensus disorder prediction 306 322 - -
Amo06g2555 412 SMART WRKY_cls 67 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 SMART WRKY_cls 239 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 Gene3D WRKY domain 224 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 Gene3D WRKY domain 53 127 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 SUPERFAMILY WRKY DNA-binding domain 63 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 Pfam WRKY DNA -binding domain 68 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 Pfam WRKY DNA -binding domain 240 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 ProSiteProfiles WRKY domain profile. 234 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo06g2555 412 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 174 410 - -
Amo06g2555 412 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 4 158 - -
Amo06g2555 412 MobiDBLite consensus disorder prediction 122 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2555 Amo-Chr6 88778513 88782092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2555 62 409 WRKY Transcription Factor Family AT2G38470 55.464 7.32e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo06g2555 WRKY 8.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2555 K13424 - gmx:100792833 598.586