Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2554 ATGGCGTCGTCAAGCTATTCGAATTCACCCTGCGCTGCCTGCAAGTTCTTGAGAAGGAAATGCATGCCGGATTGCATCTTCGCGCCGTACTTCCCACCGGAAGAGCCTCAAAAGTTCGCGAACGTTCACAAGATATTTGGGGCAAGCAACGTGAGCAAGCTTCTGAATGAGGTGCAACCCCATCAGAGGGAGGACGCCGTGAACTCTCTGGCGTACGAGGCGGAGGCGCGAATCAAGGATCCGGTCTACGGCTGCGTTGGGGCCATTTCAGTGCTCCAGCGGCAGGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAATGCAGATTTGATCCGCTACACCTGTAATGAGATGACAACTTTGCAAGATGGGAGAAGAATTGGTGAAGCTTCTTCCACTTTTTCTCAATCTCCTACTGCTTATTATTATCCATCTCCTTGGAACAATGATCCTTGTGCTGGGGATGCTGCCTTTCACAGAGGAGGTGGTAACCATATGTGA 501 0.507 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMTTLQDGRRIGEASSTFSQSPTAYYYPSPWNNDPCAGDAAFHRGGGNHM* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2554 166 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Amo06g2554 166 Coils Coil 89 109 - -
Amo06g2554 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
Amo06g2554 166 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Amo06g2554 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2554 Amo-Chr6 88749314 88751347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2554 4 126 AS2 family AT3G27650 78.571 7.39e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo06g2554 LOB 9.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2554 - - var:108328620 287.345