LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g2545	ATGAGTCATAAGAAGAAGAAAATCTCATCTTCGTCACCATCATCATGCGTAATCTTCGCAATATTTTTTTTCAGCCTCTCATGTCGTTGCCATCTCACACTCTCCGATCCAAGAATCTCAGAAGCAGGACTCAGCTGCGGCACAACGAAGGCCCCACTCTACTCCAACTACATCCCAAGCTTCATCAAAGAAATGGAGTTCCTCTCTCAGCAAGTAACCGCTCATAACTGGGGTACACATTCCGTCGACGGCGGCGGTGGCACCGTCTACGGCCTCGCGCAGTGCTTCAACGACCTCTCCCACACAGACTGCCTCCTCTGCTACGCCGCCAGCCGGACCACCCTCCCCCGCTGCCTCCCCTCCCTCTCCGCCCGCATCTACCTCGACGGCTGCTTCCTCCGTTACGACCGTTACCGCTTCTACTCCGAGGAGACCGACCCCGTCAGGGACACCGTCAACTGCACCGGAGGGAATGTGGAGGGGGTGGCTCATCAGAGGAGTGTTGGGAGGGTAGTTGACAGTGTTGTTCTGAAGGCCGTCACTAAAGGTGGCGGTTTTGCCGTGGGAGAGATTGATGGAGTTTACGCTTTGGCGCAGTGCTGGAAAACCGTAGGGAATGATGGTTGCAGAAACTGCTTGAGGAAAGCTGGGAAGCAAGTCAGAGGTTGCTTGCCTAAAAAAGAAGGGAGAGCCTTAAATGCTGGCTGTTATTTGAGGTATTCAACGGTGAAGTTCTACAATGAGCAGCGTGTAGTTGAAGCTGGAAGCAGGCCTCTTAGGAGAGGAGTAATAATAGCAGCAGTGTTAGCAGTAGCTGCAGTTATAATGCTTTCTATTTCAGCCTCTTATGCGGCCTTCACCAAATTCTCAAAGATTAAAAAAGAAAACAATAATCGTGGTCAGATTTGCTCTTCCATAAGGGAGTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAAGCCACGGATTATTTCAACCCTTCAAGAAAAGTAGGCCAAGGCGGAGCTGGTTCGGTATTCAAAGGTGTTCTCCCAAATGGGAAAGTTGTTGCTGTTAAGAGGTTGGTCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAAACTTAATTAGTGGAATTGAACATAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTTTATGAGTTCCTTCCCAACAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAAAACTCAGAACCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACAGCAGAAGGTCTTGCATATCTTCATGGAGGCTCCAAAATGAGAATCATTCATCGAGACATCAAAAGCAGTAACATTCTTCTGGATGAGAATCTTACACCTAAGATTGCGGATTTTGGTCTTGCTCGCTGTTTTGGTGCTGATAAGACACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCGGAGTACCTAATTCGAGGACAACTTACCGATAAAGCCGATGTCTACAGTTTTGGAGTACTTGTTCTTGAGATTGTATGTGGCAGGAGGAATAATGTCTTCAGAGAGGACTCTGGTTCCCTTTTGCAGACAGTTTGGAAACTGTACAGATCAAACACACTGGCTGAAGCTGTTGATTCTTCTTTGAGAATTAATGAGTATCCTTCAAATGAAGCTTTAAGAGTGCTTCACATTGGATTGCTATGCACACAAGCTTCTGCTTCCTTAAGGCCATCCATGACTCAAGTTGTGAACTTGTTAACTAATTCGAATTTGGATTTTCCTACACCAACTCAACCACCTTTTATGAACACGGGTGTGCCTGACTCAGATAGCTCCATTAGATCTTACAGCACAAATAGCTTTGTGTCAAATGCATTGAAGAAGATTGGAGTTTCCAACAGCTTCTCAGAGTCATCGAGTTCGCGCAGTTCGGATAGGCCATCATCAAGAATTGAAGAACCAATTGTCCAAGCTTGA	2001	0.4578	MSHKKKKISSSSPSSCVIFAIFFFSLSCRCHLTLSDPRISEAGLSCGTTKAPLYSNYIPSFIKEMEFLSQQVTAHNWGTHSVDGGGGTVYGLAQCFNDLSHTDCLLCYAASRTTLPRCLPSLSARIYLDGCFLRYDRYRFYSEETDPVRDTVNCTGGNVEGVAHQRSVGRVVDSVVLKAVTKGGGFAVGEIDGVYALAQCWKTVGNDGCRNCLRKAGKQVRGCLPKKEGRALNAGCYLRYSTVKFYNEQRVVEAGSRPLRRGVIIAAVLAVAAVIMLSISASYAAFTKFSKIKKENNNRGQICSSIRESSLNYKYETLEKATDYFNPSRKVGQGGAGSVFKGVLPNGKVVAVKRLVFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEFLPNKSLDQFIFEKNKTQNLNWKQRFNIILGTAEGLAYLHGGSKMRIIHRDIKSSNILLDENLTPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVCGRRNNVFREDSGSLLQTVWKLYRSNTLAEAVDSSLRINEYPSNEALRVLHIGLLCTQASASLRPSMTQVVNLLTNSNLDFPTPTQPPFMNTGVPDSDSSIRSYSTNSFVSNALKKIGVSNSFSESSSSRSSDRPSSRIEEPIVQA*	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g2545	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Amo06g2545	666	Pfam	Salt stress response/antifungal	73	138	IPR002902	-
	Amo06g2545	666	Pfam	Salt stress response/antifungal	186	242	IPR002902	-
	Amo06g2545	666	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	28	-	-
	Amo06g2545	666	ProSiteProfiles	Gnk2-homologous domain profile.	39	140	IPR002902	-
	Amo06g2545	666	CDD	STKc_IRAK	331	596	-	-
	Amo06g2545	666	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42	30	657	-	-
	Amo06g2545	666	Gene3D	Transferase(Phosphotransferase) domain 1	401	601	-	-
	Amo06g2545	666	SMART	serkin_6	325	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2545	666	ProSiteProfiles	Protein kinase domain profile.	325	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2545	666	MobiDBLite	consensus disorder prediction	640	666	-	-
	Amo06g2545	666	ProSiteProfiles	Gnk2-homologous domain profile.	146	245	IPR002902	-
	Amo06g2545	666	SUPERFAMILY	Protein kinase-like (PK-like)	309	627	IPR011009	-
	Amo06g2545	666	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	30	657	-	-
	Amo06g2545	666	Gene3D	Phosphorylase Kinase; domain 1	285	400	-	-
	Amo06g2545	666	Pfam	Protein kinase domain	327	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2545	666	Gene3D	-	43	140	IPR038408	-
	Amo06g2545	666	Gene3D	-	151	245	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g2545	Amo-Chr6	88585911	88589113	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo06g2545	17	490	Receptor kinase-like Gene Family	AT5G40380	55.717	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Amo06g2545		Pkinase	6.5e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g2545	-		-	gmx:100790404	982.63