Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2543 ATGGCCAACAAGTTTCTGCCATTAATAACAACAACAATCCTTACTATTCTTTCATCGCTATGTGGAATCCATTGCGAATATGATAGGTCCCTCAAGGGTGACATCATACATCGCTTATGCAGCTACACCAACATGACAGACCAATATTTATTTTTGAAATATCAAGAGAATTACTGGAATATGGTGAATGAGATGAAAAATGACATGGGTCGATCCAAGTTTTCGGTTAGGGAAGTTGGTGACCCACCATATCGCATATACGTGTTCTCACAATGTAGGTTTGATCTTTCTGCTTCTGAATGCGTGCACTGCTTCAAATCCCTTCAAAGCGTTTTTTCCAGTTGCATGCCTGCCAAGGGTGCCCGAACCTTTTCAAGTGATGGGTGTTTTATGCGCTATGATAATTATAGTTTTTTTCAAGAGAGCGTTACCCCTTATTATTTGAGGGGATGTAGTGATGCGAAAGCAAAAGATGAAAAAGGATTTGTTGGTTTGGCAGTAAATGTAATAAATAAAATGTCATTCGAGGCACCCAAAAAGGGAGGCTACACAGCTATAGAAGGACGACGTGATGGTTCTAATCTCGTCATCTATGGTGCGGCTACTTGTTGGAAAACATTGAGCCAGGATATGTGTTCTGCTTGCCTCTCAAATGCTGCTAGCACCGCCATATCATGTTTGCCATCAACGCAGGTCCATGCTATCAATACTGGATGCATTTTGCGTTATGCTGATTATGACTTCATTATTATTGACTTGAAAAACAAAGAAAGCGATATTTTGATGAAAAGCACAGCAATTATTCTTGCTGCAATTGCTGTTTGTTCAGTGCTTATTATAGTTGCACACTATGGGACTAAAAATGTTGACAAACTGTGGGGTATTCCAATTTTACGAACAGGACTAGAGATGACCCCAGGTAGAGTAAAATTAAGCTCATGGTTCATGCAGTTCGAGTACTCGACGTTAGAGAGAGCAACCAATGTTTTCAATGAATTCCATAAACTTGGTGAAGGGGGATATGGTGAAGTTTACAAGGGAACCTTACAAGATGGAAGAGAAATAGCGATAAAGCGTTTCTTTTTGAGTGGAAAGCAGGGAAAACAAGAAGTTTACAATGAAATTGATGTATATGGCAAAGCTCAACACAAGAATCTAGTTCGTTTCCTTGGCTGCTGCTTCACCTCCACAGAAAGCTATCTGGTTTTTGAATTCCTTGCAAACAAAAGCCTTAACTGCATCTTGTTTGACCCGGAGAAGAAGAAACAGTTGGATTGGCCAAAGAGGCATGGTATAATCCTTGGGGTAGCTGATGGATTGGAACATCTGCATAACAATTCTGAAGGGCCAATAATTCATAGAGACATCAAAGCCGGAAACATTTTATTAGACTTGAAATATAGACCAAAGATCTCTGATTTTGGCTTAGCAAAGTTGAAGTCCTATGACTGTACATCTATTGTAGGCACATTGGGGTATATGGCACCAGAATACCTTGCTGGTTGTTCCATAACAGAAAAAGTAGACGTTTACAGCTTTGGAATATTAGTGCTTGAAATTATCAGTGGAGTGGAAAATGCAAAATTTGAGTCTACTGAAGAAACATTTGAGACTCTTGTTTCCCATGCATGGAAGCATTTCAAATCAAACACCACGTCAAAAATTATTGATGAAAGCATGGAAAATCAAGATCTTGAAGAAATTACAAGAGTTATACATGTGGGACTTTTGTGCACACAAGAGTTGCCGTACCTGCGTCCCAGCATGACAGAGGTGGTAGCAATGCTTAGACAGAAGGATGTTGTAATGCCATTACCTTCCAAACCTCCATTCACTGTTGATTCTTTCGAATTTCCACAAGAAATAGAATCTAGTTGGGAATCGAAAGGTTTAGATAATTCAGAATTGACAGTGCCTTTAAATTTTGGAGAAAGAAGTGTGTAA 1944 0.393 MANKFLPLITTTILTILSSLCGIHCEYDRSLKGDIIHRLCSYTNMTDQYLFLKYQENYWNMVNEMKNDMGRSKFSVREVGDPPYRIYVFSQCRFDLSASECVHCFKSLQSVFSSCMPAKGARTFSSDGCFMRYDNYSFFQESVTPYYLRGCSDAKAKDEKGFVGLAVNVINKMSFEAPKKGGYTAIEGRRDGSNLVIYGAATCWKTLSQDMCSACLSNAASTAISCLPSTQVHAINTGCILRYADYDFIIIDLKNKESDILMKSTAIILAAIAVCSVLIIVAHYGTKNVDKLWGIPILRTGLEMTPGRVKLSSWFMQFEYSTLERATNVFNEFHKLGEGGYGEVYKGTLQDGREIAIKRFFLSGKQGKQEVYNEIDVYGKAQHKNLVRFLGCCFTSTESYLVFEFLANKSLNCILFDPEKKKQLDWPKRHGIILGVADGLEHLHNNSEGPIIHRDIKAGNILLDLKYRPKISDFGLAKLKSYDCTSIVGTLGYMAPEYLAGCSITEKVDVYSFGILVLEIISGVENAKFESTEETFETLVSHAWKHFKSNTTSKIIDESMENQDLEEITRVIHVGLLCTQELPYLRPSMTEVVAMLRQKDVVMPLPSKPPFTVDSFEFPQEIESSWESKGLDNSELTVPLNFGERSV* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2543 647 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Amo06g2543 647 Pfam Salt stress response/antifungal 158 246 IPR002902 -
Amo06g2543 647 Pfam Salt stress response/antifungal 52 136 IPR002902 -
Amo06g2543 647 SUPERFAMILY Protein kinase-like (PK-like) 313 623 IPR011009 -
Amo06g2543 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 43-RELATED 17 626 - -
Amo06g2543 647 Gene3D Phosphorylase Kinase; domain 1 303 405 - -
Amo06g2543 647 ProSiteProfiles Protein kinase domain profile. 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2543 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 17 626 - -
Amo06g2543 647 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Amo06g2543 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Amo06g2543 647 Gene3D - 144 248 IPR038408 -
Amo06g2543 647 Gene3D - 32 138 IPR038408 -
Amo06g2543 647 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2543 647 ProSiteProfiles Gnk2-homologous domain profile. 144 248 IPR002902 -
Amo06g2543 647 SMART serkin_6 330 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo06g2543 647 Gene3D Transferase(Phosphotransferase) domain 1 406 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2543 Amo-Chr6 88556995 88561005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2543 34 616 Receptor kinase-like Gene Family AT4G28670 45.588 5.75e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo06g2543 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2543 - - aip:107614699 1211.82