Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2537 ATGCTCCTACTCCGATTCACCACCAATCCTCATCCTCCACCGTCATTTCTACCCTGCATCACCAGCACCGCATCATCTTCTTCTTCCTTTTGCCCCACGCATCGCTCTCTGTTCAACAACGGAAACAAGAACTGCTTTGTTCGCTCGAATGTCAGGACCCACACTCTTCGTGTTTTCGCAATGTCCGATTCCAAGGCATACAAGATGAACCTCAACCAGTACCTTGTCACTCTCGAAAGGCCCCTCGGCATCCGTTTCGCTCTCACCGCTGACGGCAACATCATCGTCCATTCCCTCACCAAAGGGGGCAATGCAGAGAGGTCGAGGATTATAATGGTAGGTGACACTTTGAAGAAACTTGGGGATTCATCTCAGAACAAGCTCGTCGAGATTAAAGACGTTGGAGACACACAGAAGGTGCTAAATGAGCAAGCAAATTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCACCTTTTCCGATCCAACTACTGCATAAAATGATTGATCTTGAAATATTGTTTAATAGAGGTCGAGTTCCTATTATCTCCTGGAGCAAGACACTATTGGCATCTAATTTACAGCCATCTAGTGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCAAAATTTCTTACATTGAAAGGAAGCCAGCTATTGGGCAATCAAAATCAAGATGCCATCACTTATGGCGAAAGAAACTTCATTACTCAACAAACGACTCAACTTGCTTGTATTTTTACTGGAGAAGCCTGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCTCTGGACCGTTCCAAGGATGAGATGTACTATAATCATTCCCTTGGCATGCGCTATAGTAAGATTACAGAGCAACTATTTGTAGGATCATGTATTCAAACAGAAGCTGATGTGGAAACTTTGTCAAATGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAAATGAAGCTGAAAATTGGGGAATAAATGTAAGATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATTCCATAAGGGATAGAGATTCATATGATTTGAGAAAGAAACTTCCATTTTGTGTGGGGCTACTATTAAGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGTAGACCCGACAGGCCAGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGAAGATGATGTAACTTTGGTGGGAGATTTTACTGCAAACTGGAAAGAACCACTAAAGGCAGTGTATCAGGGTGCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTTATTGTTAATGGAGAATGGATGCATTCAACTGCTTCACCAGAAGAAAGCGATGATAGGGGTAATATTAACAATATAATTGTCATCGGTGAAACTGCCAGCATTCAGCCTTCGGTTCAGCACCAGCAGGAGTTCCAGGATGCAAATGTTGTGAAGGTAATTGAAAGGCCTTTGAATGAAACAGAGCGGTTTATGCTTGCGAAAGCAGCTCGTTGTATCGCATTCTCTATCTGTCCTATCAGATTAACTCCCAAGTAA 1770 0.4299 MLLLRFTTNPHPPPSFLPCITSTASSSSSFCPTHRSLFNNGNKNCFVRSNVRTHTLRVFAMSDSKAYKMNLNQYLVTLERPLGIRFALTADGNIIVHSLTKGGNAERSRIIMVGDTLKKLGDSSQNKLVEIKDVGDTQKVLNEQANSFSLVLERPTSPFPIQLLHKMIDLEILFNRGRVPIISWSKTLLASNLQPSSESSGNSGFVVFNSKFLTLKGSQLLGNQNQDAITYGERNFITQQTTQLACIFTGEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQLFVGSCIQTEADVETLSNVEGITAVLNFQSGNEAENWGINVRSINDSCQRNNILMINYSIRDRDSYDLRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEEDDVTLVGDFTANWKEPLKAVYQGARHEVEVKLPQGKYYYKFIVNGEWMHSTASPEESDDRGNINNIIVIGETASIQPSVQHQQEFQDANVVKVIERPLNETERFMLAKAARCIAFSICPIRLTPK* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2537 589 Gene3D Immunoglobulins 442 537 IPR013783 -
Amo06g2537 589 SUPERFAMILY E set domains 452 534 IPR014756 -
Amo06g2537 589 ProSiteProfiles Dual specificity protein phosphatase domain profile. 288 450 IPR020422 GO:0006470|GO:0008138
Amo06g2537 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 35 588 IPR030066 GO:0005983
Amo06g2537 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 278 421 IPR029021 -
Amo06g2537 589 CDD DSP_laforin-like 287 433 IPR045204 GO:0019203|GO:0046838
Amo06g2537 589 Pfam Dual specificity phosphatase, catalytic domain 309 418 IPR000340 GO:0008138|GO:0016311
Amo06g2537 589 ProSiteProfiles PDZ domain profile. 75 156 IPR001478 GO:0005515
Amo06g2537 589 SUPERFAMILY PDZ domain-like 75 168 IPR036034 GO:0005515
Amo06g2537 589 Pfam Glycogen recognition site of AMP-activated protein kinase 455 536 IPR032640 -
Amo06g2537 589 Gene3D Protein tyrosine phosphatase superfamily 281 555 IPR029021 -
Amo06g2537 589 CDD E_set_AMPKbeta_like_N 455 533 - -
Amo06g2537 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 35 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2537 Amo-Chr6 88474189 88481177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2537 140 589 Protein tyrosine phosphatase (PTP) family AT3G01510 66.297 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2537 - - adu:107495061 1180.24