Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2536 ATGGATTATTCCAGAATTATCGAGTCTTCAGAAACTCACAGGAATAAGTGTGCGGCATGCTTCAGACAGTTCAACAAACTGGAGCACTTGGTGGAGCACATGAGAATCTCATACCATTCGGGTCATGAACCAACTTGTGCCATTTGCAGAAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACACCTTATAGGTCCATTGCCGAAACAGGAATGCCGGGATATATTTGCATACCGAGGGTGCAAGTTTTGCTTGAAGGTGTTTGACAGCCCTAACTCGCGCAGGGTTCACCAAGAAAAATGCCAACTCTCTGGACTAACTGGAATGATTGGTCGGTTTTCTAGCATGGGTCTTCGAGATAATTTGACAATTGGATCAAGAGGAGCACAAGTAGTTGCACTTGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGCTCACTTGATCTTTGTGCAAGAGTTTGCATAATTGATGAGCATGAGAACATCATCTTCCATTCTTATGTCAAACCAGCATTTCCAGTCACTAATTATAGGTACGAGACAACAGGTATTAGAGCAGAATATTTGAGGGATGCAATACCAATGAGGCAAGTTCAGAGGAAGATTCAAGACTTCCTTTGCAATGGAGAGCCCATGTGGACAATTAGAGCAAGAGGTGGCAAAGCCAGGATTCTTGTTGGTCATGGTTTGGATCATGACCTAGAATGTCTCCAAATAGAATATCGACCAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACAAGCAAGTTGAGCAACTCACTTAAATACTTAACACAAACATATCTAGGGTATGACATTCAAACTGGGATACAGGATCCTTATGATGATTGTGTTGCAACAATGAGACTCTACAAGAGAATGAGGTCCCAGGCACATAGAATGGAGGATTACCCTTTGGCATCTGACCCTCAGAACAGAAACAATTTTGCTTCTTGGAGACAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTTGAAATTTCAAGGTCTGATTACTATTGCTGGTGCATGGATTCCTTATATACCTCATGA 1068 0.4223 MDYSRIIESSETHRNKCAACFRQFNKLEHLVEHMRISYHSGHEPTCAICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRVHQEKCQLSGLTGMIGRFSSMGLRDNLTIGSRGAQVVALACKMVGGGSDGSLDLCARVCIIDEHENIIFHSYVKPAFPVTNYRYETTGIRAEYLRDAIPMRQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQIEYRPEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVATMRLYKRMRSQAHRMEDYPLASDPQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCMDSLYTS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2536 355 Pfam Exonuclease 148 295 IPR013520 -
Amo06g2536 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Amo06g2536 355 Gene3D - 127 313 IPR036397 GO:0003676
Amo06g2536 355 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Amo06g2536 355 SUPERFAMILY Ribonuclease H-like 144 300 IPR012337 -
Amo06g2536 355 PANTHER OS02G0709000 PROTEIN 8 351 - -
Amo06g2536 355 SMART exoiiiendus 130 304 IPR013520 -
Amo06g2536 355 CDD REX4_like 132 296 IPR037431 GO:0006364|GO:0008408
Amo06g2536 355 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 8 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2536 Amo-Chr6 88455704 88458556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2536 1 352 C2H2 Transcription Factor Family AT3G27970 74.438 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2536 - - gmx:100813973 659.448