Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2529 ATGTCCTTCAATCAATCAAAATCCGACAAGAGTGACGCTGTGTACCGAAAATCCGGGCGATCTGCCAGCTTCAATCAGCAGCGAGGCTCCTCCGGTGGTGCATACGGTAGGGGCGGCGGTGCCGCACCTTCTCCGTCACTATCCTCTAACCGCAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCAATCTAGGGTAAACCCTTCTGCACTAACCGAGTCTAATAGTACTTATGCAACCCGGACTGCACCAAATGGTAGCCATGTACAGCCTCAATTTCATGGAGGATCTGATGCACCCGTTACCAATATCACTGTCAAGTCATCAGAATCCTCAAATGCTCAGAGGACAACCAGAGCTATTCCAAAAGCTCCTACTTCTCAACCTCCCACCTTGAGTTCTGATTCAGCTCCTCCGACAACCCCTGCTAAGGGAGATGCATCCAAGGCTTTCCCTTTCCAATTTGGATCTATTAGTCCTGGTTTTATTAACGGAATGGCAATTCCTGCTCGCACAAGCTCAGCTCCACCCAATTTAGATGAGCAGAAGCGTGATCAGGCTCGCCATGATTCTTTTAAACCTCCAGCACCAGCACCAGCACCGGCACCGGCACCGGCACCGGCACCTCCTGTTCCAAAGCAGCACTCAGTGAGGAAGGATATAGGTAATAATGATCAATCTAATGCTGGGACTAGGGCAAAAAAAGATATGCAGTTGTCATCATTGCCTCCAGGAAGCCAGATGCAGAAACCTTCAGTTGTTCCTTTAAGTGGAATTTCAATGGCAATGCCATATCATCAGCCACAGGCATCTGTACAGTTTGGCAGTCCCAATCCGCAGATTCAATCTCAGGGTATGCCAACAGCACCTCTACAGATGCCTTTACCAATGCCTTTGCCAATTGGAAATGCTCCACAAGTGCAGCAACAGGTCTTTGTTCCAGGCCTTCAACCACACCAGATGCATCAAGGACTCATGCATCAGAGCCAAAACATGAGTTTTACTCCTCAACTGAGCCCTCAATTGCCCCATCAGTTAGGTAGCATGGGTATAAGCATTGGCCCACAATATTCCCCACAGCAAGGAGGAAAATTTGCTCCTCGTAAAACTACTCCTGTCAAGATAACTCATCCTGAGACCCATGAGGAGCTTAGGCTTGATAAAAGGGCAGACACATATTCAGATGGTGGGTCATCTGGTGCTAAATCTCATGCTAGTGTGCCTTCTCAGTCTCAACCTGCCCAGCCATTTACAGTTTCTCATCCTATTACTTACTATCAACCCAATTCCTACAGTGCAAGTTCTGGCTTTTATCCACCTGCTAGTTCTCTTCCATTAACAAGTAGTCAGATAACTCCAAATTCTCAACCACCAAGGTTTAGTTATGCAGTGAGCCATGGTCAGCAAAATGTTGGTTTCATGAATTCATCATCTCATAATTCGATACCTGTTAATAAAGTTGGCACTCATATCCCTGCCATTACTGAACCACCTGCTCCAGAATTTTCCCACAATGTGCTTAATGCTATCTCACCATCATCAGGAGCAACATCTATGTCTATTAAAGATAGTAGTGGGACTGGTCTTGTGGACTCCTCAGTTGCCAATTCCAATATTTCTGGTGCCCGAAGGAGTCACTCTGCTAGATCTTCAGTAGCATCTGGTGATGCTAACTCCTCTTTGCCACAAAAAGGTTCTGAAATTTGCTCTGAGGTTTCGTTGGAACAGTCTAAGTTATCCGGTGATTCTTCAGTTTTGAGCTCATTGCCAAAACAATCTACTGCATATACTAAGGTTACAGCTGCTCCCATGAAGCCTTCATCTGCTGTGAATGAGGAGGCTGTTTTAGTTGTGTCTAATAATGAAGAAAAGGGGAAGGAATCTCTGAGTAGGTCAAATTCTTTGAAAGATAATAAGAAGGTACAGAAGGAAGGCCAATTACAGCATCCAGTTGTACAGTCTCCTACTGTTTCATATGTGTCTTCCCAAGCTGTTGAGAGATCTACTGGGGATTCTGAAACTGTAGTAACTAAAACAAACCATTCTGCAGCTGTTATCAGTGAAGATATCACAACAACGACTGAAGATACATTACCAACTCCCCCTTTGAGTATGCCTCATGCTGAAGCAAAAAGAAATGGTGCTGTAGAACCTTCTACTCATGTTTCAGCTGAAGGACCTGTTGCTCAAGCTGCGGATAGTTTGAAAAAGAATGATGAGCTAGATGAATTTTCACAACTGGATAAACTTTCAAAGAATAAAGATTCAGAAATGGGTGAAAATACTGAAATATCATCTATTCAAGGATGTAAACGGGAGCTGGATGAATCTACAAGCTGTATTCCAGAATGTGTAAACAAAAACCCTACTGCATTGGGTTCTTCTACAGATGTTTGTTTGAGTAGAGATGATATTGCAGTTAGTAGTGAAGCTGTTGTAAGTTCTCCGACATTAGACCAGAATTCATCTGATATTCCAGAAACAACATCAGAACATTTCGATGATGGTTTAGAGAATGCTGGCAGTGTAGTTTCTCTTCCAGCACCAGATACTAATGATAGATCAATTTTAGATCAAAATAAGGTAAAAACTACATCTAAGGCGAAAAAGAAAAGAAAAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCAACCTCTGATCTTTATAATGCATACAAGGGACCTGAAGAGAAGAAAGATGCTGTTGTTAGCTCAGAAGAAGTGGCAAGAGTTTCTACTTCTGGAAGTTTGGAGCAGTTGTCTACTAATGCTGCTCAGCCAGATGCTATAGCAGGTGAGCAATGTAGGGAGAATAAGGCTGAACTTGATGATTGGGAGGATGCTGCTGACATGTCTTCACCAAAACTTGAAGTTTCAGATCAAACTGAACAGGTTATTGATGGATGTGTAGTCATTGTGAAGAGGTACTCTCGAGATTTCCTTTTGAAGTTTGCAGAGCAGTGCACCGATCTTCCTGAAGGATTTGAAATCACAGCAGATATCGCGGAGGCTTTGATCAGTGCCAACATTAGTAGTTCACGTGATCCGCATCCTTCTCCTGGAAGGATTATAGATAGGACTGGTGGGATGTCTAGGATAGATCGGCGTGGAGGTGCTATTACTGAGGAAGACAAGTGGAGTAAAGTTTCCAATGCTTTTCATTCTGGTATGCGTTTGGATAGTATTGGAGGTAATGCAGGATTTCGTCCAGTTCAAGGAGGCAATTTTGGTGTATTAAGGAATCCTCGCTCGCCTCTGCCATATGCTGGAGCTGGAGGGATTCTTTCTGGGCCAATGCAATCCATGGGAAATCTGGGAGGAATGCCAAGAAACAGCTGTGACAGTGAAAGGTGGCAGCGTGCTTCAAGCTTCCAGCAAAGGGTTTTGGTTCCTTCTCCTCCTCAAAGTCCTTTGCAGATGATGCACAAAGCTGAAAAGAAGTATGAAATCGGTAAAGTGACAGATGTGGAAGAGGCCAAGCAGAGGCAATTGAAAGCTATATTAAATAAGTTGACTCCTCAGAATTTTGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAACATTGACAATGCAGTAACTCTCACTGGTGTCATCTCACAAATATTTGAGAAGGCTTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTCTGTTCACATTTGGCTGCTGAGTTGCCTGATTTTAGTGAAGACAATGAGAAGATAACTTTTAAGAGATTATTACTGAACAAGTGTCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAGGAAGAAGCAAACAAGGCGGATGAAGGTGAGGTCAAGCAATCTAATGAACAAAGGGAAGAGAAAAGGACAAAGGCAAGAAGACGCATGCTGGGTAATATCAGATTGATAGGAGAACTGTATAAGAAGAAAATGTTAACAGAGAGGATTATGCATGAGTGCATCAAGAAGTTATTAGGTCAGCATCAGGATCCGGATGAAGAAGATATTGAGGCTTTGTGCAAGCTCATGAGTACGATTGGGGAGATGATTGACCATCCCAAAGCCAAGGTTCATATAGATGTATATTTTGAAAGGATGAAATCATTATCAAACAACATGAATTTATCTTCGAGGGTGAGGTTCATGTTGAAAGATGCCATTGATTTAAGAAAGAACAAATGGCAACAAAGGAGGAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTGCACAGAGATGCTACCCAAGAGAGGCAGGCCCAAACAGGTAGGTTGGGTCGTGGTCTGGGCAATAATCCAGCAAGAAAAAACCCTGTAGATTTTGGTCTGAGAGGGGCATCTATGTTACCTTCACCTGTTGCTCAGATGGGTGGATTACGTGGGCTGCCTTCTCAAATTCGCGGATATGGTCCACAGGATGCTCGAATGGAAGACAGGCATGAGGCTAGGATTCTCTCAGTTCCAATGAGTCAAAGATTGGGTGATGATTCAATAACCTTGGGACCCCAAGGAGGTCTTGCTAGAGGAATGTCCTTAAGAGGTTCAACTGCAGTTTCAAGTTCAACCAGTTTTAATGGTTATACTAATTTAGCAGAGGGCTCACCATACAGTTCTAGGGAGGGCCTAGCATCAAGATATATTCCAGATAGATTTGCTGCGCGAACAGCTGATCAATCAAGTGCCCAAGAGCGAAATATCAATTACGGTAACAGGGACTCGAGAAATGCAGATGGGAATTTCGACATGCCTGTTGTAACTTCGCCTTCTCAACTTCAAGGGACAGCAGTCTCCCAGATTCCTTCTTCAGAAAGGGTTCCGGAGGAACGGTTGCTAGACATGTCAATGGCAGCAATAAGAGAATATTATAGAAGTTTCAATACTTCGGAGAAGTATAAACGTCAGCTGGCATGGATGGGGGGAAGCCGGTTTGTTGAAAAGGGAAAAAAAGGGAGAAAAGGAGGTAAAGTTCCTTCTGGATGTGTTAAACCAAAGAAATATGGCGGTGCTAGGGATGAGAAGGAAGTTGTTTTGTGTGTGAAAGATTTGAACTCTCCAAGCTTCCATCCTTCCATGGTGTCTATTTGGGTCACAGACTCTTTCGAGAGAAAGAACACAGAGAGAGATCTTCTGGCTCAGCTACTAGTCAACCTTGTGAAGTCTCAGGATGGTATCTTGAGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATTCAGTTAACGATGCCCCCAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCCAAAGCTGTAACAGAGCATGTAGTCTCTTTGAAAGAGATTGGGCAGTTAATACATGATGGTGGTGACGAACCTGGCAGTCTCTTAGAAGCAGGACTCGCAGCTGATGTTCTTGGAAATACCTTGGAGGTCATAAAAATGGAGAAAGGTGATGACGTTTTAAGTGAGATCCGGACAAGCTCCAACTTGCGGTTGGAGACTTTCAGGCCACCTGAACCTTTGAAATCAAGGAAGATACTCAAATTTGCTGAAAACGTTTTCTCCATACCGGTTGGTGGGAAGAATTTTGCAAATGTGAGAGCGTGGAGTGGAAGAGATGCGTTGAACGATGAGGGTAGGAGTATTTTTGTGAGCTCCGTTGGCAGTGCTGGAGCGAGAAAGAAGAAAAGATTCGTTGCCCCAAAATGCAATTGTGGAATTCATGCAATTCTATTCATGTCGTCAACACAGTCGAACCCTAATAGGCTATTCTTTAGATGCTCATATTTCAAGACTGCAGAATCTCATTGCAAATATTTTCTATGGCTGGATGAATATGTTTCACTGTTTAAAGAGGAGCAAATAAATGATGACAGTCTCCAAGGTCGAAATCCAAAGCAAAATCACTTGCTGGATGCAGCTGTTTCGATGGAAGAGAAAGTGACTAAGTTAGAGGACAGAGTTTCTGGTTTAGAGTTGTAG 5928 0.4344 MSFNQSKSDKSDAVYRKSGRSASFNQQRGSSGGAYGRGGGAAPSPSLSSNRSFNKKSNNAQGGQSRVNPSALTESNSTYATRTAPNGSHVQPQFHGGSDAPVTNITVKSSESSNAQRTTRAIPKAPTSQPPTLSSDSAPPTTPAKGDASKAFPFQFGSISPGFINGMAIPARTSSAPPNLDEQKRDQARHDSFKPPAPAPAPAPAPAPAPPVPKQHSVRKDIGNNDQSNAGTRAKKDMQLSSLPPGSQMQKPSVVPLSGISMAMPYHQPQASVQFGSPNPQIQSQGMPTAPLQMPLPMPLPIGNAPQVQQQVFVPGLQPHQMHQGLMHQSQNMSFTPQLSPQLPHQLGSMGISIGPQYSPQQGGKFAPRKTTPVKITHPETHEELRLDKRADTYSDGGSSGAKSHASVPSQSQPAQPFTVSHPITYYQPNSYSASSGFYPPASSLPLTSSQITPNSQPPRFSYAVSHGQQNVGFMNSSSHNSIPVNKVGTHIPAITEPPAPEFSHNVLNAISPSSGATSMSIKDSSGTGLVDSSVANSNISGARRSHSARSSVASGDANSSLPQKGSEICSEVSLEQSKLSGDSSVLSSLPKQSTAYTKVTAAPMKPSSAVNEEAVLVVSNNEEKGKESLSRSNSLKDNKKVQKEGQLQHPVVQSPTVSYVSSQAVERSTGDSETVVTKTNHSAAVISEDITTTTEDTLPTPPLSMPHAEAKRNGAVEPSTHVSAEGPVAQAADSLKKNDELDEFSQLDKLSKNKDSEMGENTEISSIQGCKRELDESTSCIPECVNKNPTALGSSTDVCLSRDDIAVSSEAVVSSPTLDQNSSDIPETTSEHFDDGLENAGSVVSLPAPDTNDRSILDQNKVKTTSKAKKKRKEILQKADAAGSTSDLYNAYKGPEEKKDAVVSSEEVARVSTSGSLEQLSTNAAQPDAIAGEQCRENKAELDDWEDAADMSSPKLEVSDQTEQVIDGCVVIVKRYSRDFLLKFAEQCTDLPEGFEITADIAEALISANISSSRDPHPSPGRIIDRTGGMSRIDRRGGAITEEDKWSKVSNAFHSGMRLDSIGGNAGFRPVQGGNFGVLRNPRSPLPYAGAGGILSGPMQSMGNLGGMPRNSCDSERWQRASSFQQRVLVPSPPQSPLQMMHKAEKKYEIGKVTDVEEAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLAAELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSNEQREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQHQDPDEEDIEALCKLMSTIGEMIDHPKAKVHIDVYFERMKSLSNNMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDATQERQAQTGRLGRGLGNNPARKNPVDFGLRGASMLPSPVAQMGGLRGLPSQIRGYGPQDARMEDRHEARILSVPMSQRLGDDSITLGPQGGLARGMSLRGSTAVSSSTSFNGYTNLAEGSPYSSREGLASRYIPDRFAARTADQSSAQERNINYGNRDSRNADGNFDMPVVTSPSQLQGTAVSQIPSSERVPEERLLDMSMAAIREYYRSFNTSEKYKRQLAWMGGSRFVEKGKKGRKGGKVPSGCVKPKKYGGARDEKEVVLCVKDLNSPSFHPSMVSIWVTDSFERKNTERDLLAQLLVNLVKSQDGILSQAQLIKGFESVLSTLEDSVNDAPKAPEFLGRIFAKAVTEHVVSLKEIGQLIHDGGDEPGSLLEAGLAADVLGNTLEVIKMEKGDDVLSEIRTSSNLRLETFRPPEPLKSRKILKFAENVFSIPVGGKNFANVRAWSGRDALNDEGRSIFVSSVGSAGARKKKRFVAPKCNCGIHAILFMSSTQSNPNRLFFRCSYFKTAESHCKYFLWLDEYVSLFKEEQINDDSLQGRNPKQNHLLDAAVSMEEKVTKLEDRVSGLEL* 1976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1507 1525 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1254 1282 - -
Amo06g2529 1975 Pfam MIF4G domain 1162 1384 IPR003890 GO:0003723|GO:0005515
Amo06g2529 1975 MobiDBLite consensus disorder prediction 222 253 - -
Amo06g2529 1975 Pfam MA3 domain 1659 1757 IPR003891 -
Amo06g2529 1975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 127 1619 - -
Amo06g2529 1975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 1658 1822 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 540 570 - -
Amo06g2529 1975 ProSiteProfiles MI domain profile. 1643 1768 IPR003891 -
Amo06g2529 1975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 127 1619 IPR045208 GO:0003743
Amo06g2529 1975 SUPERFAMILY ARM repeat 1158 1386 IPR016024 -
Amo06g2529 1975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1658 1822 IPR045208 GO:0003743
Amo06g2529 1975 MobiDBLite consensus disorder prediction 620 648 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1545 1572 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1543 1572 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 356 417 - -
Amo06g2529 1975 Gene3D - 1162 1397 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 195 213 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 812 835 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1507 1529 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 18 32 - -
Amo06g2529 1975 SUPERFAMILY ARM repeat 1655 1830 IPR016024 -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1 253 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 812 828 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 397 417 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 43 142 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1387 1408 - -
Amo06g2529 1975 Coils Coil 1244 1264 - -
Amo06g2529 1975 SMART ma3_7 1651 1759 IPR003891 -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1387 1427 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 375 393 - -
Amo06g2529 1975 Coils Coil 1956 1975 - -
Amo06g2529 1975 Gene3D - 1654 1834 - -
Amo06g2529 1975 SMART if4_15 1162 1384 IPR003890 GO:0003723|GO:0005515
Amo06g2529 1975 MobiDBLite consensus disorder prediction 625 645 - -
Amo06g2529 1975 MobiDBLite consensus disorder prediction 1012 1033 - -
Amo06g2529 1975 Pfam GRF zinc finger 1883 1927 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2529 Amo-Chr6 88249267 88259630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2529 1 1831 Eukaryotic Initiation Factors Gene Family AT3G60240 44.649 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2529 K03260 - gmx:100796636 2358.56