LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g2526	ATGCAGCTCAATCACCTCTGCATTGTTCTTCCACCAAATTCCGGTGAAATGGATCAACCTGATCAGAAGCCTTTTCAACTACCAAAGAAACAAGTCAAGGCTCCTCATCATCATAGAGGTTGTGGGAGGCAAGTAGTTTCTTTGCTCCAAGATTCTTTGAGAAAGTTATACGGCTTAAAAGGGTGGACAATTTGCAAGCATGGAGTGAAGAAAGAGAAGTGTTCCGGCGGCGGCGCGTTTCACGACATGGACGGGGTGCAAGTTTCAGCCAAGATAGGGAGGGACAACCCCAGGATTTTCAGCTATGCAGAGCTCTTCATAGGGTCCAAAGGTTTCAGCGAAGAGCAAGTTCTTGGAAGTGGAGGGTTCGGAAAAGTTTTCAAGGCGGTTTTGCCGAGTGACGGAACTATTGTAGCCGTTAAATGCTGCTTGGCGGGGAAAGGGAAGCAATTTGAGAAGAGTTTTGAAGCAGAGTTAACGGCGGTTGCGGATCTTCGCCACAAGAATCTTGTGAGGCTTAGAGGATGGTGTGTTCATGAAGATCAGTTGCATCTTGTATATGACTACATGCCTAACAGCAGCCTTGACCGTATACTCTTCCGGAAGCTGGAGAATTCGAAGACTGAGCTTCTTGATTGGGAACACAGAGTGAAAATTGTGAAAGGTTTGGCGGCGGCATTGCATTATCTCCATGAACAATTGGAAACTCAAATCATTCATAGGGATGTGAAGACCAGCAACGTGATGCTTGATTCGCATTTCAATGCCAAACTAGGTGACTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTTCAAGCCGAGAAAAATATCAACAAGAATTGACAATTTCCGTTTGGGAGACACGTCGAGAATCGGAGGAACGATTGGGTATCTTCCCCCTGAAAGCTTGCAGAAAGCAGGCAATGCTACTTCGAAATCCGATGTCTTCAGCTTCGGAATAGTTCTTCTAGAAGTGGTTTCTGGAAGGAGAGCCATAGACCTCGCTTATCCAGATGATGAAATTATTTTGCTTGATTGGATCAGAAGACTCTCCGATGTAGGGAAGCTTCTGGAAGCAGGGGATACACGGCTTCCAGATGGTTCCTACAAGCTTTCAGAGATGCAGCATCTCATTCACATTGCTCTTCTCTGCACTCTCCAAGAACCGCAGCTGCGTCCCAGCATGAAATGGACTGTGGAAGCACTTTCCGACGTGTCATGCAAGTTGCCAGCCCTCCCTTCGTTTCAATCTCACCCTCTATACATCTCTTTGTCATCCGCATCGGAGACTAGTCATAGCAGCGCAAGCGGCAACAGCTTTGCTACCGAGAATAACTATCACACAGCTGCAGGGGAAACCGTATACATAACCGCTGAAAACAGAAACAGTGAGATCATGTCTTCAAGGAGCACCAATCAACAGCGGCGATTTCCTGTGCTGGAGACGCCAAGGGAAATATCATTCAAGGAAATCGTTTCAGCTACAGACAATTTTTCAGATTCAAGGAGGGTGGCAGAGCTAGACTTTGGAACTGCTTATCATGGAATCCTACATGACAATTGCCATGTTTTGGTGAAACGCCTCGGGATGAAAACTTGCCCTGCGTTGCGTGACAGATTCTCCAACGAACTCCGGAATCTAGCAAGGCTGCGCCATAGGAATTTGGTGCAGCTTCGAGGATGGTGCACCGAGCAAGGCGAGATGCTTGTTGTGTATGACTACTCAGCTAGAAGAATTCTGAGTCAAATGCTTCTCCGTCATAACAATCATAGATCCGGAGATTCTTCTGTCCTTCAGTGGCATCACAGGTATTACATATCGAAAACGCTTGCTTGTGCAGTTCTGTATCTACATGAGGAATGGGATGAGCAAGTCATTCATAGAAACATTACCTCTTCAGCTATCATTCTTGAGCAAGATATGAATCCCAGACTTGGTTGTTTTGCTCTTGCTGAGTTTTTGACAAGGAATGAACACGGCCACCATGTAATCACAGACACTAGCAAATCGGCTCGCGGCATTTTTGGCTACATGTCACCAGAATACGTGGAATCCGGCGAAGCAACGCCCGCAGCTGATGTTTACAGTTTTGGAGTTGTGGTTCTTGAAGTTGTAAGTGGACAGATGGCAGTAGATTTTAGGCAGCCGGAGGTTCTGTTGGTGAAGAAAGTTCATGAATTCGAGATGCGAAAAAGGCCATTGAAGGAATTAGCAGACAAAAGACTCAATGGAGAGTACAATGAGAAAGAACTGCTGAGATTGATAAGACTGGGAATCGCATGCACCCGCTGTGACCCACAATTAAGGCCAAGCATGAGGCAAATTGTAAGCATCCTTGATGGCAAGGACAGCTTACTCGTCGAACTGAACAAAGAGAGCAGGGAAGATTGGAGAGAAAGAAATGCAATTTCTTTGTCACTCATTAGGAGAATCCAAGCTCTAGGAATACAGTAA	2460	0.4606	MQLNHLCIVLPPNSGEMDQPDQKPFQLPKKQVKAPHHHRGCGRQVVSLLQDSLRKLYGLKGWTICKHGVKKEKCSGGGAFHDMDGVQVSAKIGRDNPRIFSYAELFIGSKGFSEEQVLGSGGFGKVFKAVLPSDGTIVAVKCCLAGKGKQFEKSFEAELTAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNSSLDRILFRKLENSKTELLDWEHRVKIVKGLAAALHYLHEQLETQIIHRDVKTSNVMLDSHFNAKLGDFGMARWLEHELEFKPRKISTRIDNFRLGDTSRIGGTIGYLPPESLQKAGNATSKSDVFSFGIVLLEVVSGRRAIDLAYPDDEIILLDWIRRLSDVGKLLEAGDTRLPDGSYKLSEMQHLIHIALLCTLQEPQLRPSMKWTVEALSDVSCKLPALPSFQSHPLYISLSSASETSHSSASGNSFATENNYHTAAGETVYITAENRNSEIMSSRSTNQQRRFPVLETPREISFKEIVSATDNFSDSRRVAELDFGTAYHGILHDNCHVLVKRLGMKTCPALRDRFSNELRNLARLRHRNLVQLRGWCTEQGEMLVVYDYSARRILSQMLLRHNNHRSGDSSVLQWHHRYYISKTLACAVLYLHEEWDEQVIHRNITSSAIILEQDMNPRLGCFALAEFLTRNEHGHHVITDTSKSARGIFGYMSPEYVESGEATPAADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADKRLNGEYNEKELLRLIRLGIACTRCDPQLRPSMRQIVSILDGKDSLLVELNKESREDWRERNAISLSLIRRIQALGIQ*	820

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g2526	819	ProSitePatterns	Protein kinases ATP-binding region signature.	118	147	IPR017441	GO:0005524
	Amo06g2526	819	PANTHER	-	1	818	-	-
	Amo06g2526	819	ProSiteProfiles	Protein kinase domain profile.	112	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2526	819	SMART	serkin_6	112	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2526	819	Pfam	Protein kinase domain	113	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2526	819	Gene3D	Phosphorylase Kinase; domain 1	459	576	-	-
	Amo06g2526	819	CDD	STKc_IRAK	511	783	-	-
	Amo06g2526	819	PANTHER	RECEPTOR LIKE PROTEIN KINASE S.2	1	818	-	-
	Amo06g2526	819	SUPERFAMILY	Protein kinase-like (PK-like)	476	783	IPR011009	-
	Amo06g2526	819	SUPERFAMILY	Protein kinase-like (PK-like)	96	434	IPR011009	-
	Amo06g2526	819	Gene3D	Phosphorylase Kinase; domain 1	84	189	-	-
	Amo06g2526	819	Gene3D	Transferase(Phosphotransferase) domain 1	582	802	-	-
	Amo06g2526	819	Gene3D	Transferase(Phosphotransferase) domain 1	190	410	-	-
	Amo06g2526	819	Pfam	Protein tyrosine and serine/threonine kinase	506	781	IPR001245	GO:0004672\|GO:0006468
	Amo06g2526	819	ProSiteProfiles	Protein kinase domain profile.	500	788	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo06g2526	819	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	238	250	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g2526	Amo-Chr6	88198427	88200886	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo06g2526	486	784	Receptor kinase-like Gene Family	AT5G55830	36.634	2.04e-52	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Amo06g2526		Pkinase	3.3e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g2526	-		-	vun:114184452	1275