Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2505 ATGATGATGGATCAGGGACAAGGAAGAGAAAACTTGCTTCTTCAGAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGACGCTCACGACCTTCTTCCCTCTTCTGTCACCGTTCAAGGGAACAACACCAACACCAACAGGATCATAACTACTACCATTCTCCATAACGGGTCATCATCGGAACCGGGTCGGATCCTCCATCATCATGATATTCAGTACCAGCAGGAGCAGGAGCAGGAGCAGGAGGTTGGGCTTGTTGCCACCTTTGGAAACGTGCATAGGAAGAGGAGAATGGCTAGGATGAGGAGGAGGTCCTCACCAACACTGATGCACCTTCAGTTCCACGCTAACACCACCACCCCCACCACTACTCTTTTTCCACCTCTTTCTTCTTCAGGGCAATCTTCTGATACACCACCACCACCACCACCACCGACACTTTCTCCTCCTCCTCTTCTTCTTCCTTCTGCTGCTGTTGGTCCTTCCACTACTACTAATACCTCCCCTCACGTGCCTACTCATAATCCCGCACGTGTAATTGATCATACAAGCTTGAGATTCCTTTTTCAAAAGGAGTTAAAGAACAGTGATGTTAGTTCTCTCAGGAGGATGGTATTGCCAAAGAAAGCAGCAGAGGCTTTTCTTCCTCCTCTTGAATCAAAGGAAGGAATTCTTATCAGCATGGATGACCTCGATGGCATTCATGTTTGGAGTTTTAAGTACAGATTTTGGCCCAACAATAATAGTCGCATGTACGTCCTTGAAAACACTGGAGAATTTGTTAACGCACATGCTCTTCGGATGGGAGATTCTATTATGGTTTACCAAGATAGTCGAAATCATAATTATGTCATTCAAGCAAAGAAAGTTTCTGATCAAGATGAATTTATGGAAGAAACTAGCGACATGGCAAATGATATCTTCCTTAATGATTACGAAGTTAGCAAACCTGGTTGTTTCAGCTTGACTTACCCAGCTTTGAATGACACTACAGGCATGTCATTCATATATGAGACTACATTCTCAAATGATAGTCCTCTTGACTTTTTGGGCGGATCAATGACTAATTTTTCAAGGATCGGCCCAACTGAAACCTTTGGTTCTGTTGAAAATTTGTCACTTGATGACTTCTACTAA 1137 0.4424 MMMDQGQGRENLLLQKTEACAFVAGVDAHDLLPSSVTVQGNNTNTNRIITTTILHNGSSSEPGRILHHHDIQYQQEQEQEQEVGLVATFGNVHRKRRMARMRRRSSPTLMHLQFHANTTTPTTTLFPPLSSSGQSSDTPPPPPPPTLSPPPLLLPSAAVGPSTTTNTSPHVPTHNPARVIDHTSLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPPLESKEGILISMDDLDGIHVWSFKYRFWPNNNSRMYVLENTGEFVNAHALRMGDSIMVYQDSRNHNYVIQAKKVSDQDEFMEETSDMANDIFLNDYEVSKPGCFSLTYPALNDTTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPTETFGSVENLSLDDFY* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2505 378 MobiDBLite consensus disorder prediction 134 156 - -
Amo06g2505 378 Gene3D - 185 304 IPR015300 -
Amo06g2505 378 MobiDBLite consensus disorder prediction 118 177 - -
Amo06g2505 378 CDD B3_DNA 187 289 IPR003340 GO:0003677
Amo06g2505 378 MobiDBLite consensus disorder prediction 118 133 - -
Amo06g2505 378 ProSiteProfiles B3 DNA-binding domain profile. 189 291 IPR003340 GO:0003677
Amo06g2505 378 MobiDBLite consensus disorder prediction 158 173 - -
Amo06g2505 378 SMART B3_2 189 291 IPR003340 GO:0003677
Amo06g2505 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 44 378 - -
Amo06g2505 378 SUPERFAMILY DNA-binding pseudobarrel domain 187 285 IPR015300 -
Amo06g2505 378 Pfam B3 DNA binding domain 189 284 IPR003340 GO:0003677
Amo06g2505 378 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 378 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2505 Amo-Chr6 87714049 87718860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2505 170 378 B3 DNA Binding Superfamily AT3G26790 56.612 2.66e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo06g2505 B3 3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2505 - - adu:107494712 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3342 16 140843325 140848122 Amo06g2505 06 87714049 87718860 hybridization