Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2498 ATGGCGAGCAGGTACTGGGTGGTGTCTCTTCCCGTTCACAACTCCGCTTCCACTCTCTGGAACCAGCTCCAGGATCAAATCTCCAAGCACTCTTTCGACACCCCTCTCTACAGGTTCAACATCCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGATGATCTCGCTAAGTCCAACACTTTCATGGAAGGAGTGTCGCACAAGATCCGGCGCCAGATTGAGGAACTTGAGAGGATCTCCGGCGTCGAGAGCAGCGGTCTCACTGTCGATGGTGTCCCTGTTGATTCCTATTTAACCAGATTTGTTTGGGATGAAGCAAAGTACCCCACTATGTCGCCATTGAAAGAGATCGTTGATGGAATTCATGGTCAAGTAGCAAAGATAGAGGATGATCTCAAGGTTCGTGTTTCTGAGTACAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCCTAGCTGTCCGTGACCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACTCTCCTTGCCATTGTTTCCAAGTATTCACAAAAGGATTGGCTCGCAAGCTACGAAACACTGACAAACTATGTGGTCCCCAGATCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTACACTGTAACACTCTTCAATCGTGTTGCGGACAACTTCAGAACTAGTGCACGTGAAAAAGGGTTTCAAATTCGTGATTTTGAATACAGTCCAGAAACACACGAGGGGCGAAAGCAGGAGTTAGATAAATTGATGCGGGAWCAGGAAAGTTTGAGAGGTTCTTTGTTGCAGTGGTGCTATACCAGCTATGGAGAGGTTTTCAGCTCGTGGATGCATTTCTGTGCTGTACGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTACCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCTGTAAAAGCTGAAAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCACAAACAGTTCATACTGGAAGTCTGAGGATGATGTAGGGATGGCGGCCCTAGCGGGTGAGGATGCCCACCCCTACGTGTCCTTCACAATCAATCTTGTTTGA 1122 0.459 MASRYWVVSLPVHNSASTLWNQLQDQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNTFMEGVSHKIRRQIEELERISGVESSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLASYETLTNYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMRXQESLRGSLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSTNSSYWKSEDDVGMAALAGEDAHPYVSFTINLV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2498 373 Gene3D - 163 251 - -
Amo06g2498 373 CDD V-ATPase_C 5 370 IPR004907 GO:0033180|GO:0046961|GO:1902600
Amo06g2498 373 Gene3D - 41 312 - -
Amo06g2498 373 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Amo06g2498 373 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 372 - -
Amo06g2498 373 SUPERFAMILY Vacuolar ATP synthase subunit C 2 372 IPR036132 GO:0015078|GO:0033180|GO:1902600
Amo06g2498 373 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Amo06g2498 373 Pfam V-ATPase subunit C 5 366 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2498 Amo-Chr6 87629802 87634564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2498 1 372 Primary Pumps ATPases(2) AT1G12840 83.690 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2498 K02148 - gmx:100803728 673.315