Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2486 ATGGACAGAGACATGCTTCCAGCAAGGTGGACGGAACCCTTACTTGGAGAAGACAGCACTGACATTGGAATTCCCATGAATGCCCCTCTCACTTCCTTCAAAACCATACCCCAGCCTCCTCCAATTACCATAAACCCCTTCCCCTTCCTCCAACAACAAACCGTAACTGCTAACACTAACGATAACAACTTCCTCACGCACCAAGGCATGGACACTTTTGCCCTCGAACACTCTTTCTCTACTCTCAAACCCTCCTTCTTCGCCAACAACAACAGTCCTTTTGATAATGCCTTCGATTTGGGACCTGACTCCGGTTTCTTCTTCTCCGGGAACCATTCTTCCAACTCCCCTCTTTTGATGGCTTTCTCTCAGCCTCTAATTGGCTCCGCTGACATGACTTCCGCTACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGGCACCGACGATGATGCGGTGGCGCTGGGTGCTGGATTTGAAATGGAAGCGTTTGCGGCTTCTGGAAATGCTCTGTTTTCGAGCAGGGGAAAGGGGTTGAGGCCTCTTGAGGTGGCTCCGACGGTTGGTGCGCCTCCCACGCTCTTCCAGAAGCGTGCCGCGCTCCGGCGAGGCTCCGGCGGGGCTGAGAGTCTTGAAGCTTTGGGAATGGGGAGTTTGGAGAGGAAATGGGGAGAGGGGGAAGTTGAAGAAGGTAGCATTGAGGCTTCAGTGTGGAATTACGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCTGTGGTGGTGGAGGAGAGTGGGAATCATAGCGGCGGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGCGAAGAATCTCATGGCGGAGAGGCGGCGCAGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCAACTCCTCCTGGCTCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCGTGCCGGGTGAAGGAGGAACTGTATCCTGGTGTCTTGCCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTAGGGTGAGGGAGGGGAGAGCTGTCAACATTCATATGTTTTGTACTCGCCGACCAGGTCTTCTGCTTTCAACCATGCGGGCTCTGGATAACCTCGGATTAGATGTTCAGCAGGCTGTTATTAGCTGCTTCAATGGCTTTGCTTTAGACGTCTTCAGAGCCGAGCAATGCAGAGAAGGGCAGGATGTTCTTCCTGAGGAAATCAAAGCAGTGCTGCTGGATTCAGCAGGGATCCATGACATGATGTGA 1443 0.5239 MDRDMLPARWTEPLLGEDSTDIGIPMNAPLTSFKTIPQPPPITINPFPFLQQQTVTANTNDNNFLTHQGMDTFALEHSFSTLKPSFFANNNSPFDNAFDLGPDSGFFFSGNHSSNSPLLMAFSQPLIGSADMTSATEFPPATRLLPAGGTDDDAVALGAGFEMEAFAASGNALFSSRGKGLRPLEVAPTVGAPPTLFQKRAALRRGSGGAESLEALGMGSLERKWGEGEVEEGSIEASVWNYDSDENVESGSKAVVVEESGNHSGGGNGNLSLSGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESTPPGSSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEEIKAVLLDSAGIHDMM* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2486 480 MobiDBLite consensus disorder prediction 346 371 - -
Amo06g2486 480 Gene3D - 282 351 IPR036638 GO:0046983
Amo06g2486 480 MobiDBLite consensus disorder prediction 258 292 - -
Amo06g2486 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Amo06g2486 480 CDD ACT_UUR-ACR-like 409 469 - -
Amo06g2486 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 357 IPR036638 GO:0046983
Amo06g2486 480 PANTHER BHLH TRANSCRIPTIONAL FACTOR 65 480 - -
Amo06g2486 480 SMART finulus 294 343 IPR011598 GO:0046983
Amo06g2486 480 Pfam Helix-loop-helix DNA-binding domain 295 337 IPR011598 GO:0046983
Amo06g2486 480 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 65 480 - -
Amo06g2486 480 MobiDBLite consensus disorder prediction 263 277 - -
Amo06g2486 480 CDD bHLH_AtAMS_like 291 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2486 Amo-Chr6 87295074 87298905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2486 47 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.756 8.92e-126 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo06g2486 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2486 - - aip:107647300 777.704